Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0722

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0719 and Echvi_0720 are separated by 255 nucleotidesEchvi_0720 and Echvi_0721 are separated by 274 nucleotidesEchvi_0721 and Echvi_0722 are separated by 5 nucleotidesEchvi_0722 and Echvi_0723 are separated by 59 nucleotidesEchvi_0723 and Echvi_0724 are separated by 30 nucleotides Echvi_0719: Echvi_0719 - pseudouridine synthase, at 810,728 to 811,873 _0719 Echvi_0720: Echvi_0720 - hypothetical protein, at 812,129 to 812,263 _0720 Echvi_0721: Echvi_0721 - Uncharacterized protein conserved in bacteria, at 812,538 to 812,819 _0721 Echvi_0722: Echvi_0722 - Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes, at 812,825 to 814,201 _0722 Echvi_0723: Echvi_0723 - hypothetical protein, at 814,261 to 814,734 _0723 Echvi_0724: Echvi_0724 - hypothetical protein, at 814,765 to 815,304 _0724 Position (kb) 812 813 814 815Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 811.895 kb on - strandat 811.897 kb on - strandat 811.906 kb on + strandat 811.907 kb on - strandat 811.913 kb on - strandat 811.944 kb on + strandat 811.964 kb on - strandat 812.056 kb on - strandat 812.221 kb on + strand, within Echvi_0720at 812.222 kb on - strand, within Echvi_0720at 812.268 kb on + strandat 812.270 kb on + strandat 812.270 kb on + strandat 812.351 kb on - strandat 812.372 kb on - strandat 812.411 kb on - strandat 812.411 kb on - strandat 812.514 kb on + strandat 812.524 kb on + strandat 812.525 kb on - strandat 812.537 kb on + strandat 812.537 kb on + strandat 812.538 kb on - strandat 812.607 kb on + strand, within Echvi_0721at 812.642 kb on - strand, within Echvi_0721at 812.746 kb on - strand, within Echvi_0721at 812.781 kb on + strand, within Echvi_0721at 812.817 kb on + strandat 812.877 kb on + strandat 813.172 kb on + strand, within Echvi_0722at 813.173 kb on - strand, within Echvi_0722at 813.236 kb on - strand, within Echvi_0722at 813.240 kb on + strand, within Echvi_0722at 813.302 kb on + strand, within Echvi_0722at 813.302 kb on + strand, within Echvi_0722at 813.302 kb on + strand, within Echvi_0722at 813.302 kb on + strand, within Echvi_0722at 813.303 kb on - strand, within Echvi_0722at 813.307 kb on + strand, within Echvi_0722at 813.308 kb on - strand, within Echvi_0722at 813.308 kb on - strand, within Echvi_0722at 813.308 kb on - strand, within Echvi_0722at 813.372 kb on - strand, within Echvi_0722at 813.548 kb on + strand, within Echvi_0722at 813.562 kb on + strand, within Echvi_0722at 813.600 kb on + strand, within Echvi_0722at 813.601 kb on - strand, within Echvi_0722at 813.654 kb on + strand, within Echvi_0722at 813.740 kb on + strand, within Echvi_0722at 813.740 kb on + strand, within Echvi_0722at 813.741 kb on - strand, within Echvi_0722at 813.741 kb on - strand, within Echvi_0722at 813.741 kb on - strand, within Echvi_0722at 813.741 kb on - strand, within Echvi_0722at 813.741 kb on - strand, within Echvi_0722at 813.788 kb on + strand, within Echvi_0722at 813.871 kb on - strand, within Echvi_0722at 813.874 kb on + strand, within Echvi_0722at 813.875 kb on - strand, within Echvi_0722at 813.875 kb on - strand, within Echvi_0722at 813.875 kb on - strand, within Echvi_0722at 813.941 kb on - strand, within Echvi_0722at 813.950 kb on - strand, within Echvi_0722at 813.981 kb on + strand, within Echvi_0722at 813.982 kb on - strand, within Echvi_0722at 813.982 kb on - strand, within Echvi_0722at 813.982 kb on - strand, within Echvi_0722at 814.108 kb on - strandat 814.121 kb on + strandat 814.122 kb on - strandat 814.122 kb on - strandat 814.122 kb on - strandat 814.122 kb on - strandat 814.126 kb on + strandat 814.126 kb on + strandat 814.126 kb on + strandat 814.320 kb on + strand, within Echvi_0723at 814.321 kb on - strand, within Echvi_0723at 814.388 kb on + strand, within Echvi_0723at 814.389 kb on - strand, within Echvi_0723at 814.436 kb on + strand, within Echvi_0723at 814.437 kb on - strand, within Echvi_0723at 814.509 kb on + strand, within Echvi_0723at 814.652 kb on + strand, within Echvi_0723at 814.663 kb on + strand, within Echvi_0723at 814.672 kb on - strand, within Echvi_0723at 814.715 kb on - strandat 814.735 kb on - strandat 814.755 kb on - strandat 814.755 kb on - strandat 814.771 kb on - strandat 814.771 kb on - strandat 814.890 kb on + strand, within Echvi_0724at 814.992 kb on - strand, within Echvi_0724at 814.992 kb on - strand, within Echvi_0724at 814.998 kb on + strand, within Echvi_0724at 815.027 kb on + strand, within Echvi_0724at 815.183 kb on + strand, within Echvi_0724at 815.183 kb on + strand, within Echvi_0724at 815.184 kb on - strand, within Echvi_0724at 815.184 kb on - strand, within Echvi_0724

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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811,895 - -0.3
811,897 - -0.3
811,906 + -0.4
811,907 - -0.3
811,913 - -1.9
811,944 + -1.0
811,964 - +1.3
812,056 - -2.2
812,221 + Echvi_0720 0.68 +0.5
812,222 - Echvi_0720 0.69 +0.9
812,268 + +0.5
812,270 + +1.0
812,270 + +1.1
812,351 - -0.2
812,372 - +0.9
812,411 - +0.6
812,411 - +1.4
812,514 + +0.3
812,524 + +0.5
812,525 - -0.1
812,537 + -1.5
812,537 + -2.7
812,538 - +0.1
812,607 + Echvi_0721 0.24 +1.1
812,642 - Echvi_0721 0.37 -0.2
812,746 - Echvi_0721 0.74 -0.5
812,781 + Echvi_0721 0.86 -2.4
812,817 + +0.8
812,877 + +0.8
813,172 + Echvi_0722 0.25 -0.5
813,173 - Echvi_0722 0.25 +0.4
813,236 - Echvi_0722 0.30 +0.7
813,240 + Echvi_0722 0.30 +3.4
813,302 + Echvi_0722 0.35 -1.3
813,302 + Echvi_0722 0.35 -3.1
813,302 + Echvi_0722 0.35 -0.6
813,302 + Echvi_0722 0.35 -0.8
813,303 - Echvi_0722 0.35 -1.3
813,307 + Echvi_0722 0.35 -0.0
813,308 - Echvi_0722 0.35 -0.3
813,308 - Echvi_0722 0.35 +0.1
813,308 - Echvi_0722 0.35 -2.0
813,372 - Echvi_0722 0.40 -0.7
813,548 + Echvi_0722 0.53 -0.3
813,562 + Echvi_0722 0.54 +1.3
813,600 + Echvi_0722 0.56 +0.7
813,601 - Echvi_0722 0.56 -0.9
813,654 + Echvi_0722 0.60 -3.4
813,740 + Echvi_0722 0.66 -0.9
813,740 + Echvi_0722 0.66 -2.0
813,741 - Echvi_0722 0.67 -0.7
813,741 - Echvi_0722 0.67 -0.2
813,741 - Echvi_0722 0.67 -0.8
813,741 - Echvi_0722 0.67 -0.0
813,741 - Echvi_0722 0.67 -2.1
813,788 + Echvi_0722 0.70 +1.1
813,871 - Echvi_0722 0.76 -1.2
813,874 + Echvi_0722 0.76 -1.7
813,875 - Echvi_0722 0.76 -0.5
813,875 - Echvi_0722 0.76 -0.3
813,875 - Echvi_0722 0.76 -1.6
813,941 - Echvi_0722 0.81 +0.5
813,950 - Echvi_0722 0.82 -0.7
813,981 + Echvi_0722 0.84 -0.3
813,982 - Echvi_0722 0.84 +1.0
813,982 - Echvi_0722 0.84 -1.6
813,982 - Echvi_0722 0.84 -1.1
814,108 - +0.3
814,121 + -0.3
814,122 - +1.4
814,122 - +1.0
814,122 - -1.9
814,122 - +0.9
814,126 + -0.3
814,126 + +0.0
814,126 + +0.4
814,320 + Echvi_0723 0.12 +1.0
814,321 - Echvi_0723 0.13 -0.0
814,388 + Echvi_0723 0.27 +1.8
814,389 - Echvi_0723 0.27 -0.8
814,436 + Echvi_0723 0.37 -0.3
814,437 - Echvi_0723 0.37 -1.3
814,509 + Echvi_0723 0.52 -0.6
814,652 + Echvi_0723 0.82 -1.3
814,663 + Echvi_0723 0.85 +0.6
814,672 - Echvi_0723 0.87 +0.0
814,715 - -1.7
814,735 - -0.5
814,755 - -0.6
814,755 - -0.3
814,771 - +0.2
814,771 - +0.8
814,890 + Echvi_0724 0.23 -0.0
814,992 - Echvi_0724 0.42 -0.7
814,992 - Echvi_0724 0.42 +0.0
814,998 + Echvi_0724 0.43 +0.3
815,027 + Echvi_0724 0.49 -1.5
815,183 + Echvi_0724 0.77 -0.2
815,183 + Echvi_0724 0.77 +0.4
815,184 - Echvi_0724 0.78 +0.3
815,184 - Echvi_0724 0.78 +1.8

Or see this region's nucleotide sequence