Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0545 and Echvi_0546 are separated by 73 nucleotides Echvi_0546 and Echvi_0547 are separated by 30 nucleotides Echvi_0547 and Echvi_0548 are separated by 42 nucleotides
Echvi_0545: Echvi_0545 - hypothetical protein, at 611,042 to 613,243
_0545
Echvi_0546: Echvi_0546 - hypothetical protein, at 613,317 to 614,129
_0546
Echvi_0547: Echvi_0547 - SusD family., at 614,160 to 616,307
_0547
Echvi_0548: Echvi_0548 - TonB-linked outer membrane protein, SusC/RagA family, at 616,350 to 619,577
_0548
Position (kb) 614
615
616
617 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 613.190 kb on - strand at 613.221 kb on + strand at 613.222 kb on - strand at 613.227 kb on - strand at 613.304 kb on - strand at 613.314 kb on + strand at 613.315 kb on - strand at 613.348 kb on + strand at 613.349 kb on - strand at 613.391 kb on + strand at 613.392 kb on - strand at 613.511 kb on + strand, within Echvi_0546 at 613.511 kb on + strand, within Echvi_0546 at 613.556 kb on - strand, within Echvi_0546 at 613.560 kb on + strand, within Echvi_0546 at 613.560 kb on + strand, within Echvi_0546 at 613.561 kb on - strand, within Echvi_0546 at 613.601 kb on + strand, within Echvi_0546 at 613.602 kb on - strand, within Echvi_0546 at 613.603 kb on + strand, within Echvi_0546 at 613.745 kb on + strand, within Echvi_0546 at 613.745 kb on + strand, within Echvi_0546 at 613.763 kb on + strand, within Echvi_0546 at 613.820 kb on + strand, within Echvi_0546 at 613.820 kb on + strand, within Echvi_0546 at 613.853 kb on + strand, within Echvi_0546 at 613.853 kb on + strand, within Echvi_0546 at 613.855 kb on + strand, within Echvi_0546 at 613.965 kb on + strand, within Echvi_0546 at 613.966 kb on - strand, within Echvi_0546 at 614.010 kb on + strand, within Echvi_0546 at 614.010 kb on + strand, within Echvi_0546 at 614.010 kb on + strand, within Echvi_0546 at 614.011 kb on - strand, within Echvi_0546 at 614.011 kb on - strand, within Echvi_0546 at 614.054 kb on - strand at 614.110 kb on - strand at 614.110 kb on - strand at 614.113 kb on + strand at 614.114 kb on - strand at 614.114 kb on - strand at 614.114 kb on - strand at 614.114 kb on - strand at 614.114 kb on - strand at 614.114 kb on - strand at 614.153 kb on + strand at 614.157 kb on - strand at 614.224 kb on + strand at 614.224 kb on + strand at 614.237 kb on + strand at 614.242 kb on + strand at 614.291 kb on - strand at 614.321 kb on - strand at 614.404 kb on + strand, within Echvi_0547 at 614.486 kb on + strand, within Echvi_0547 at 614.487 kb on - strand, within Echvi_0547 at 614.487 kb on - strand, within Echvi_0547 at 614.487 kb on - strand, within Echvi_0547 at 614.487 kb on - strand, within Echvi_0547 at 614.553 kb on - strand, within Echvi_0547 at 614.574 kb on + strand, within Echvi_0547 at 614.575 kb on - strand, within Echvi_0547 at 614.604 kb on + strand, within Echvi_0547 at 614.604 kb on + strand, within Echvi_0547 at 614.665 kb on + strand, within Echvi_0547 at 614.665 kb on + strand, within Echvi_0547 at 614.666 kb on - strand, within Echvi_0547 at 614.738 kb on + strand, within Echvi_0547 at 614.739 kb on - strand, within Echvi_0547 at 614.746 kb on + strand, within Echvi_0547 at 614.746 kb on + strand, within Echvi_0547 at 614.746 kb on + strand, within Echvi_0547 at 614.747 kb on - strand, within Echvi_0547 at 614.747 kb on - strand, within Echvi_0547 at 614.888 kb on + strand, within Echvi_0547 at 614.889 kb on - strand, within Echvi_0547 at 614.890 kb on + strand, within Echvi_0547 at 614.924 kb on + strand, within Echvi_0547 at 614.977 kb on - strand, within Echvi_0547 at 614.977 kb on - strand, within Echvi_0547 at 614.977 kb on - strand, within Echvi_0547 at 615.034 kb on + strand, within Echvi_0547 at 615.085 kb on + strand, within Echvi_0547 at 615.085 kb on + strand, within Echvi_0547 at 615.086 kb on - strand, within Echvi_0547 at 615.094 kb on + strand, within Echvi_0547 at 615.197 kb on + strand, within Echvi_0547 at 615.197 kb on + strand, within Echvi_0547 at 615.239 kb on - strand, within Echvi_0547 at 615.247 kb on + strand, within Echvi_0547 at 615.248 kb on - strand, within Echvi_0547 at 615.248 kb on - strand, within Echvi_0547 at 615.248 kb on - strand, within Echvi_0547 at 615.248 kb on - strand, within Echvi_0547 at 615.282 kb on + strand, within Echvi_0547 at 615.282 kb on + strand, within Echvi_0547 at 615.286 kb on + strand, within Echvi_0547 at 615.286 kb on + strand, within Echvi_0547 at 615.287 kb on - strand, within Echvi_0547 at 615.288 kb on + strand, within Echvi_0547 at 615.314 kb on + strand, within Echvi_0547 at 615.422 kb on - strand, within Echvi_0547 at 615.422 kb on - strand, within Echvi_0547 at 615.422 kb on - strand, within Echvi_0547 at 615.539 kb on - strand, within Echvi_0547 at 615.560 kb on - strand, within Echvi_0547 at 615.591 kb on + strand, within Echvi_0547 at 615.595 kb on + strand, within Echvi_0547 at 615.595 kb on + strand, within Echvi_0547 at 615.596 kb on - strand, within Echvi_0547 at 615.596 kb on - strand, within Echvi_0547 at 615.633 kb on + strand, within Echvi_0547 at 615.735 kb on + strand, within Echvi_0547 at 615.735 kb on + strand, within Echvi_0547 at 615.736 kb on - strand, within Echvi_0547 at 615.824 kb on - strand, within Echvi_0547 at 615.832 kb on + strand, within Echvi_0547 at 615.832 kb on + strand, within Echvi_0547 at 615.832 kb on + strand, within Echvi_0547 at 615.832 kb on + strand, within Echvi_0547 at 615.832 kb on + strand, within Echvi_0547 at 615.833 kb on - strand, within Echvi_0547 at 615.833 kb on - strand, within Echvi_0547 at 615.833 kb on - strand, within Echvi_0547 at 615.879 kb on + strand, within Echvi_0547 at 615.884 kb on - strand, within Echvi_0547 at 615.901 kb on - strand, within Echvi_0547 at 615.944 kb on - strand, within Echvi_0547 at 615.969 kb on + strand, within Echvi_0547 at 616.018 kb on + strand, within Echvi_0547 at 616.018 kb on + strand, within Echvi_0547 at 616.019 kb on - strand, within Echvi_0547 at 616.023 kb on + strand, within Echvi_0547 at 616.024 kb on - strand, within Echvi_0547 at 616.043 kb on - strand, within Echvi_0547 at 616.047 kb on - strand, within Echvi_0547 at 616.073 kb on - strand, within Echvi_0547 at 616.073 kb on - strand, within Echvi_0547 at 616.087 kb on + strand, within Echvi_0547 at 616.087 kb on + strand, within Echvi_0547 at 616.087 kb on + strand, within Echvi_0547 at 616.088 kb on - strand, within Echvi_0547 at 616.088 kb on - strand, within Echvi_0547 at 616.088 kb on - strand, within Echvi_0547 at 616.195 kb on - strand at 616.195 kb on - strand at 616.198 kb on - strand at 616.201 kb on - strand at 616.201 kb on - strand at 616.201 kb on - strand at 616.209 kb on + strand at 616.209 kb on + strand at 616.218 kb on - strand at 616.225 kb on + strand at 616.225 kb on + strand at 616.225 kb on + strand at 616.260 kb on + strand at 616.312 kb on + strand at 616.313 kb on - strand at 616.334 kb on - strand at 616.334 kb on - strand at 616.342 kb on + strand at 616.342 kb on + strand at 616.351 kb on + strand at 616.371 kb on + strand at 616.371 kb on + strand at 616.372 kb on - strand at 616.376 kb on + strand at 616.377 kb on - strand at 616.378 kb on + strand at 616.379 kb on - strand at 616.451 kb on + strand at 616.452 kb on - strand at 616.468 kb on + strand at 616.469 kb on - strand at 616.480 kb on + strand at 616.480 kb on + strand at 616.496 kb on + strand at 616.496 kb on + strand at 616.518 kb on + strand at 616.519 kb on - strand at 616.556 kb on - strand at 616.566 kb on + strand at 616.574 kb on + strand at 616.597 kb on + strand at 616.608 kb on - strand at 616.608 kb on - strand at 616.608 kb on - strand at 616.608 kb on - strand at 616.608 kb on - strand at 616.609 kb on + strand at 616.649 kb on - strand at 616.690 kb on + strand, within Echvi_0548 at 616.691 kb on - strand, within Echvi_0548 at 616.733 kb on - strand, within Echvi_0548 at 616.754 kb on + strand, within Echvi_0548 at 616.754 kb on + strand, within Echvi_0548 at 616.754 kb on + strand, within Echvi_0548 at 616.755 kb on - strand, within Echvi_0548 at 616.804 kb on + strand, within Echvi_0548 at 616.833 kb on + strand, within Echvi_0548 at 616.833 kb on + strand, within Echvi_0548 at 616.834 kb on - strand, within Echvi_0548 at 616.873 kb on - strand, within Echvi_0548 at 616.915 kb on + strand, within Echvi_0548 at 616.915 kb on + strand, within Echvi_0548 at 616.916 kb on - strand, within Echvi_0548 at 616.937 kb on + strand, within Echvi_0548 at 616.943 kb on + strand, within Echvi_0548 at 616.945 kb on + strand, within Echvi_0548 at 616.946 kb on - strand, within Echvi_0548 at 616.946 kb on - strand, within Echvi_0548 at 616.946 kb on - strand, within Echvi_0548 at 616.946 kb on - strand, within Echvi_0548 at 616.979 kb on + strand, within Echvi_0548 at 616.979 kb on + strand, within Echvi_0548 at 616.999 kb on + strand, within Echvi_0548 at 616.999 kb on + strand, within Echvi_0548 at 617.000 kb on - strand, within Echvi_0548 at 617.000 kb on - strand, within Echvi_0548 at 617.114 kb on + strand, within Echvi_0548 at 617.134 kb on + strand, within Echvi_0548 at 617.198 kb on + strand, within Echvi_0548 at 617.255 kb on + strand, within Echvi_0548 at 617.255 kb on + strand, within Echvi_0548 at 617.290 kb on + strand, within Echvi_0548
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 613,190 - +0.0 613,221 + +0.0 613,222 - +0.1 613,227 - +0.5 613,304 - -1.2 613,314 + -0.3 613,315 - +0.4 613,348 + -0.1 613,349 - +0.7 613,391 + -1.0 613,392 - -1.1 613,511 + Echvi_0546 0.24 -0.2 613,511 + Echvi_0546 0.24 +0.1 613,556 - Echvi_0546 0.29 +1.0 613,560 + Echvi_0546 0.30 +1.1 613,560 + Echvi_0546 0.30 +0.8 613,561 - Echvi_0546 0.30 -0.1 613,601 + Echvi_0546 0.35 -0.2 613,602 - Echvi_0546 0.35 -1.2 613,603 + Echvi_0546 0.35 -0.2 613,745 + Echvi_0546 0.53 -0.5 613,745 + Echvi_0546 0.53 -0.3 613,763 + Echvi_0546 0.55 +0.8 613,820 + Echvi_0546 0.62 -1.5 613,820 + Echvi_0546 0.62 +0.7 613,853 + Echvi_0546 0.66 -0.7 613,853 + Echvi_0546 0.66 +0.6 613,855 + Echvi_0546 0.66 -1.5 613,965 + Echvi_0546 0.80 +0.7 613,966 - Echvi_0546 0.80 -0.4 614,010 + Echvi_0546 0.85 -0.2 614,010 + Echvi_0546 0.85 +0.5 614,010 + Echvi_0546 0.85 -0.1 614,011 - Echvi_0546 0.85 -1.0 614,011 - Echvi_0546 0.85 +0.8 614,054 - -0.0 614,110 - -0.2 614,110 - +0.6 614,113 + +0.5 614,114 - +0.6 614,114 - +0.8 614,114 - -2.0 614,114 - -1.0 614,114 - -0.7 614,114 - +0.6 614,153 + +0.9 614,157 - +0.5 614,224 + -0.4 614,224 + -0.5 614,237 + -0.1 614,242 + -0.2 614,291 - +0.4 614,321 - -2.8 614,404 + Echvi_0547 0.11 -0.8 614,486 + Echvi_0547 0.15 +0.1 614,487 - Echvi_0547 0.15 +0.1 614,487 - Echvi_0547 0.15 +1.3 614,487 - Echvi_0547 0.15 +0.1 614,487 - Echvi_0547 0.15 -1.0 614,553 - Echvi_0547 0.18 +0.5 614,574 + Echvi_0547 0.19 -0.7 614,575 - Echvi_0547 0.19 +0.2 614,604 + Echvi_0547 0.21 +1.2 614,604 + Echvi_0547 0.21 -0.4 614,665 + Echvi_0547 0.24 -0.7 614,665 + Echvi_0547 0.24 -1.0 614,666 - Echvi_0547 0.24 +0.3 614,738 + Echvi_0547 0.27 -1.8 614,739 - Echvi_0547 0.27 -1.1 614,746 + Echvi_0547 0.27 -0.8 614,746 + Echvi_0547 0.27 +1.3 614,746 + Echvi_0547 0.27 -0.1 614,747 - Echvi_0547 0.27 -0.2 614,747 - Echvi_0547 0.27 +0.3 614,888 + Echvi_0547 0.34 +0.1 614,889 - Echvi_0547 0.34 -0.5 614,890 + Echvi_0547 0.34 +0.6 614,924 + Echvi_0547 0.36 -0.0 614,977 - Echvi_0547 0.38 +0.6 614,977 - Echvi_0547 0.38 -1.2 614,977 - Echvi_0547 0.38 -1.7 615,034 + Echvi_0547 0.41 -0.0 615,085 + Echvi_0547 0.43 -1.1 615,085 + Echvi_0547 0.43 -0.2 615,086 - Echvi_0547 0.43 -0.5 615,094 + Echvi_0547 0.43 -0.0 615,197 + Echvi_0547 0.48 -2.1 615,197 + Echvi_0547 0.48 -0.6 615,239 - Echvi_0547 0.50 +1.3 615,247 + Echvi_0547 0.51 -0.9 615,248 - Echvi_0547 0.51 -0.9 615,248 - Echvi_0547 0.51 -0.1 615,248 - Echvi_0547 0.51 -0.1 615,248 - Echvi_0547 0.51 +0.4 615,282 + Echvi_0547 0.52 -0.4 615,282 + Echvi_0547 0.52 -0.5 615,286 + Echvi_0547 0.52 -0.4 615,286 + Echvi_0547 0.52 -0.3 615,287 - Echvi_0547 0.52 -1.5 615,288 + Echvi_0547 0.53 -0.5 615,314 + Echvi_0547 0.54 +0.4 615,422 - Echvi_0547 0.59 +0.3 615,422 - Echvi_0547 0.59 -2.0 615,422 - Echvi_0547 0.59 -0.5 615,539 - Echvi_0547 0.64 +0.3 615,560 - Echvi_0547 0.65 +0.0 615,591 + Echvi_0547 0.67 +0.3 615,595 + Echvi_0547 0.67 +0.3 615,595 + Echvi_0547 0.67 +0.8 615,596 - Echvi_0547 0.67 -0.7 615,596 - Echvi_0547 0.67 +0.4 615,633 + Echvi_0547 0.69 +0.0 615,735 + Echvi_0547 0.73 -0.7 615,735 + Echvi_0547 0.73 -0.5 615,736 - Echvi_0547 0.73 -0.3 615,824 - Echvi_0547 0.77 +0.1 615,832 + Echvi_0547 0.78 +2.0 615,832 + Echvi_0547 0.78 -1.2 615,832 + Echvi_0547 0.78 -0.5 615,832 + Echvi_0547 0.78 +0.2 615,832 + Echvi_0547 0.78 -0.1 615,833 - Echvi_0547 0.78 -0.9 615,833 - Echvi_0547 0.78 -1.4 615,833 - Echvi_0547 0.78 +0.8 615,879 + Echvi_0547 0.80 +0.1 615,884 - Echvi_0547 0.80 -2.8 615,901 - Echvi_0547 0.81 -0.1 615,944 - Echvi_0547 0.83 +0.9 615,969 + Echvi_0547 0.84 +0.4 616,018 + Echvi_0547 0.86 +1.4 616,018 + Echvi_0547 0.86 -2.4 616,019 - Echvi_0547 0.87 +0.5 616,023 + Echvi_0547 0.87 +0.5 616,024 - Echvi_0547 0.87 +0.1 616,043 - Echvi_0547 0.88 -0.0 616,047 - Echvi_0547 0.88 -0.2 616,073 - Echvi_0547 0.89 -0.2 616,073 - Echvi_0547 0.89 +0.1 616,087 + Echvi_0547 0.90 -0.7 616,087 + Echvi_0547 0.90 -1.1 616,087 + Echvi_0547 0.90 -0.4 616,088 - Echvi_0547 0.90 -0.5 616,088 - Echvi_0547 0.90 +1.2 616,088 - Echvi_0547 0.90 -1.1 616,195 - -0.2 616,195 - +0.5 616,198 - +0.4 616,201 - +0.4 616,201 - +0.1 616,201 - +0.1 616,209 + -1.4 616,209 + +0.7 616,218 - -0.0 616,225 + -1.4 616,225 + +1.1 616,225 + +0.2 616,260 + -1.2 616,312 + -1.1 616,313 - +0.6 616,334 - -0.3 616,334 - +2.2 616,342 + -0.7 616,342 + -0.4 616,351 + +2.2 616,371 + +0.1 616,371 + -1.4 616,372 - -0.4 616,376 + -0.6 616,377 - -0.1 616,378 + +0.2 616,379 - -0.2 616,451 + -0.6 616,452 - -0.2 616,468 + -2.4 616,469 - -1.3 616,480 + -0.1 616,480 + -1.1 616,496 + -1.7 616,496 + -0.0 616,518 + -1.3 616,519 - -0.3 616,556 - -0.9 616,566 + -0.2 616,574 + +0.4 616,597 + -0.5 616,608 - +0.8 616,608 - +0.3 616,608 - -0.6 616,608 - -0.7 616,608 - +0.3 616,609 + +0.1 616,649 - -1.0 616,690 + Echvi_0548 0.11 +0.2 616,691 - Echvi_0548 0.11 -0.8 616,733 - Echvi_0548 0.12 -0.6 616,754 + Echvi_0548 0.13 +1.2 616,754 + Echvi_0548 0.13 -1.8 616,754 + Echvi_0548 0.13 +0.0 616,755 - Echvi_0548 0.13 +2.0 616,804 + Echvi_0548 0.14 -2.4 616,833 + Echvi_0548 0.15 +0.6 616,833 + Echvi_0548 0.15 -0.6 616,834 - Echvi_0548 0.15 -1.1 616,873 - Echvi_0548 0.16 +0.5 616,915 + Echvi_0548 0.18 +1.4 616,915 + Echvi_0548 0.18 -0.3 616,916 - Echvi_0548 0.18 -3.4 616,937 + Echvi_0548 0.18 -0.1 616,943 + Echvi_0548 0.18 -0.1 616,945 + Echvi_0548 0.18 +2.8 616,946 - Echvi_0548 0.18 -1.1 616,946 - Echvi_0548 0.18 -1.5 616,946 - Echvi_0548 0.18 -1.6 616,946 - Echvi_0548 0.18 -0.5 616,979 + Echvi_0548 0.19 +0.2 616,979 + Echvi_0548 0.19 -0.3 616,999 + Echvi_0548 0.20 -0.2 616,999 + Echvi_0548 0.20 +0.3 617,000 - Echvi_0548 0.20 +0.3 617,000 - Echvi_0548 0.20 +0.2 617,114 + Echvi_0548 0.24 +1.4 617,134 + Echvi_0548 0.24 +0.2 617,198 + Echvi_0548 0.26 -0.7 617,255 + Echvi_0548 0.28 -0.8 617,255 + Echvi_0548 0.28 +0.2 617,290 + Echvi_0548 0.29 +0.1
Or see this region's nucleotide sequence