Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20870 and CA264_20875 are separated by 397 nucleotides CA264_20875 and CA264_20880 are separated by 78 nucleotides
CA264_20870: CA264_20870 - addiction module protein, at 36,491 to 37,606
_20870
CA264_20875: CA264_20875 - resolvase, at 38,004 to 38,693
_20875
CA264_20880: CA264_20880 - hypothetical protein, at 38,772 to 39,953
_20880
Position (kb) 38
39 Strain fitness (log2 ratio) -2
-1
0
1
2 at 37.067 kb on + strand, within CA264_20870 at 37.068 kb on - strand, within CA264_20870 at 37.068 kb on - strand, within CA264_20870 at 37.093 kb on + strand, within CA264_20870 at 37.093 kb on + strand, within CA264_20870 at 37.094 kb on - strand, within CA264_20870 at 37.094 kb on - strand, within CA264_20870 at 37.110 kb on - strand, within CA264_20870 at 37.137 kb on + strand, within CA264_20870 at 37.138 kb on - strand, within CA264_20870 at 37.149 kb on - strand, within CA264_20870 at 37.160 kb on + strand, within CA264_20870 at 37.161 kb on - strand, within CA264_20870 at 37.355 kb on + strand, within CA264_20870 at 37.394 kb on + strand, within CA264_20870 at 37.394 kb on + strand, within CA264_20870 at 37.413 kb on + strand, within CA264_20870 at 37.413 kb on + strand, within CA264_20870 at 37.476 kb on + strand, within CA264_20870 at 37.476 kb on + strand, within CA264_20870 at 37.515 kb on - strand at 37.515 kb on - strand at 37.515 kb on - strand at 37.518 kb on - strand at 37.518 kb on - strand at 37.565 kb on + strand at 37.566 kb on - strand at 37.566 kb on - strand at 37.604 kb on + strand at 37.604 kb on + strand at 37.607 kb on + strand at 37.607 kb on + strand at 37.607 kb on + strand at 37.608 kb on - strand at 37.679 kb on + strand at 37.680 kb on - strand at 37.712 kb on + strand at 37.712 kb on + strand at 37.712 kb on + strand at 37.713 kb on - strand at 37.713 kb on - strand at 37.713 kb on - strand at 37.716 kb on + strand at 37.720 kb on + strand at 37.721 kb on - strand at 37.781 kb on - strand at 37.781 kb on - strand at 37.840 kb on - strand at 37.922 kb on - strand at 37.983 kb on - strand at 37.984 kb on + strand at 37.986 kb on + strand at 37.986 kb on + strand at 37.986 kb on + strand at 37.990 kb on - strand at 37.990 kb on - strand at 38.010 kb on + strand at 38.170 kb on + strand, within CA264_20875 at 38.261 kb on + strand, within CA264_20875 at 38.473 kb on + strand, within CA264_20875 at 38.556 kb on + strand, within CA264_20875 at 38.556 kb on + strand, within CA264_20875 at 38.700 kb on + strand at 38.701 kb on - strand at 38.703 kb on - strand at 38.707 kb on - strand at 38.709 kb on - strand at 38.736 kb on + strand at 38.736 kb on + strand at 38.737 kb on - strand at 38.737 kb on - strand at 38.745 kb on + strand at 38.761 kb on - strand at 38.761 kb on - strand at 38.771 kb on + strand at 38.772 kb on - strand at 38.782 kb on + strand at 38.782 kb on + strand at 38.783 kb on - strand at 38.787 kb on - strand at 38.905 kb on + strand, within CA264_20880 at 38.912 kb on + strand, within CA264_20880 at 39.001 kb on + strand, within CA264_20880 at 39.086 kb on + strand, within CA264_20880 at 39.100 kb on - strand, within CA264_20880 at 39.100 kb on - strand, within CA264_20880 at 39.102 kb on - strand, within CA264_20880 at 39.105 kb on + strand, within CA264_20880 at 39.210 kb on + strand, within CA264_20880 at 39.210 kb on + strand, within CA264_20880 at 39.221 kb on + strand, within CA264_20880 at 39.228 kb on - strand, within CA264_20880 at 39.262 kb on - strand, within CA264_20880 at 39.329 kb on - strand, within CA264_20880 at 39.427 kb on + strand, within CA264_20880 at 39.436 kb on - strand, within CA264_20880 at 39.479 kb on + strand, within CA264_20880 at 39.491 kb on - strand, within CA264_20880
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 37,067 + CA264_20870 0.52 -0.2 37,068 - CA264_20870 0.52 +0.1 37,068 - CA264_20870 0.52 +0.1 37,093 + CA264_20870 0.54 -0.2 37,093 + CA264_20870 0.54 +2.5 37,094 - CA264_20870 0.54 -0.2 37,094 - CA264_20870 0.54 +0.1 37,110 - CA264_20870 0.55 -0.4 37,137 + CA264_20870 0.58 +0.6 37,138 - CA264_20870 0.58 -0.3 37,149 - CA264_20870 0.59 -0.1 37,160 + CA264_20870 0.60 -0.1 37,161 - CA264_20870 0.60 +0.4 37,355 + CA264_20870 0.77 -0.1 37,394 + CA264_20870 0.81 -0.3 37,394 + CA264_20870 0.81 +0.6 37,413 + CA264_20870 0.83 -0.5 37,413 + CA264_20870 0.83 -0.4 37,476 + CA264_20870 0.88 +0.2 37,476 + CA264_20870 0.88 +1.5 37,515 - +0.6 37,515 - +0.2 37,515 - -0.8 37,518 - -2.2 37,518 - +0.1 37,565 + -0.4 37,566 - -0.1 37,566 - -0.0 37,604 + -0.2 37,604 + +0.2 37,607 + +0.2 37,607 + +0.2 37,607 + -0.7 37,608 - +0.4 37,679 + +2.0 37,680 - -0.7 37,712 + -2.2 37,712 + +0.3 37,712 + -0.1 37,713 - +0.6 37,713 - +0.2 37,713 - -0.1 37,716 + -0.2 37,720 + +0.2 37,721 - +0.6 37,781 - +0.0 37,781 - +0.3 37,840 - +0.0 37,922 - -1.4 37,983 - +1.8 37,984 + -0.1 37,986 + +1.6 37,986 + -1.1 37,986 + +0.1 37,990 - +0.4 37,990 - +0.5 38,010 + +0.5 38,170 + CA264_20875 0.24 +0.1 38,261 + CA264_20875 0.37 -0.9 38,473 + CA264_20875 0.68 +0.3 38,556 + CA264_20875 0.80 +0.3 38,556 + CA264_20875 0.80 +2.0 38,700 + -0.2 38,701 - -0.2 38,703 - -0.6 38,707 - +0.2 38,709 - -0.0 38,736 + -1.3 38,736 + +0.2 38,737 - -1.0 38,737 - +0.6 38,745 + -1.2 38,761 - -0.1 38,761 - +0.3 38,771 + -0.2 38,772 - -0.5 38,782 + -0.0 38,782 + -0.2 38,783 - +0.6 38,787 - -0.3 38,905 + CA264_20880 0.11 -1.4 38,912 + CA264_20880 0.12 +0.4 39,001 + CA264_20880 0.19 +0.1 39,086 + CA264_20880 0.27 -1.8 39,100 - CA264_20880 0.28 +0.1 39,100 - CA264_20880 0.28 +2.5 39,102 - CA264_20880 0.28 +1.3 39,105 + CA264_20880 0.28 -0.8 39,210 + CA264_20880 0.37 -0.1 39,210 + CA264_20880 0.37 +0.9 39,221 + CA264_20880 0.38 -0.2 39,228 - CA264_20880 0.39 -1.8 39,262 - CA264_20880 0.41 -0.8 39,329 - CA264_20880 0.47 -0.3 39,427 + CA264_20880 0.55 -0.3 39,436 - CA264_20880 0.56 +0.0 39,479 + CA264_20880 0.60 +0.2 39,491 - CA264_20880 0.61 -0.2
Or see this region's nucleotide sequence