Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19650

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19645 and CA264_19650 are separated by 205 nucleotidesCA264_19650 and CA264_19655 are separated by 200 nucleotidesCA264_19655 and CA264_19660 are separated by 21 nucleotides CA264_19645: CA264_19645 - IS256 family transposase, at 4,537,061 to 4,538,284 _19645 CA264_19650: CA264_19650 - translation elongation factor Ts, at 4,538,490 to 4,539,323 _19650 CA264_19655: CA264_19655 - 30S ribosomal protein S2, at 4,539,524 to 4,540,291 _19655 CA264_19660: CA264_19660 - 30S ribosomal protein S9, at 4,540,313 to 4,540,699 _19660 Position (kb) 4538 4539 4540Strain fitness (log2 ratio) -1 0 1 2at 4537.580 kb on + strand, within CA264_19645at 4537.674 kb on - strand, within CA264_19645at 4537.674 kb on - strand, within CA264_19645at 4537.747 kb on + strand, within CA264_19645at 4537.748 kb on - strand, within CA264_19645at 4537.748 kb on - strand, within CA264_19645at 4537.822 kb on - strand, within CA264_19645at 4537.863 kb on - strand, within CA264_19645at 4537.863 kb on - strand, within CA264_19645at 4538.039 kb on - strand, within CA264_19645at 4538.039 kb on - strand, within CA264_19645at 4538.120 kb on - strand, within CA264_19645at 4538.168 kb on + strandat 4538.332 kb on + strandat 4538.350 kb on - strandat 4539.349 kb on + strandat 4539.421 kb on + strandat 4539.422 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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4,537,580 + CA264_19645 0.42 +0.0
4,537,674 - CA264_19645 0.50 +1.0
4,537,674 - CA264_19645 0.50 -0.0
4,537,747 + CA264_19645 0.56 -1.2
4,537,748 - CA264_19645 0.56 +0.2
4,537,748 - CA264_19645 0.56 -0.1
4,537,822 - CA264_19645 0.62 -0.5
4,537,863 - CA264_19645 0.66 +1.1
4,537,863 - CA264_19645 0.66 +0.4
4,538,039 - CA264_19645 0.80 -0.8
4,538,039 - CA264_19645 0.80 +0.8
4,538,120 - CA264_19645 0.87 +1.8
4,538,168 + -0.8
4,538,332 + +0.8
4,538,350 - -0.6
4,539,349 + +0.0
4,539,421 + -0.1
4,539,422 - +1.1

Or see this region's nucleotide sequence