Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19035 and CA264_19040 are separated by 71 nucleotides CA264_19040 and CA264_19045 are separated by 149 nucleotides CA264_19045 and CA264_19050 are separated by 243 nucleotides
CA264_19035: CA264_19035 - integrase, at 4,425,163 to 4,426,041
_19035
CA264_19040: CA264_19040 - 30S ribosomal protein S21, at 4,426,113 to 4,426,307
_19040
CA264_19045: CA264_19045 - acyl-CoA dehydrogenase, at 4,426,457 to 4,427,596
_19045
CA264_19050: CA264_19050 - capsular biosynthesis protein, at 4,427,840 to 4,428,592
_19050
Position (kb)
4426
4427
4428 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4426.112 kb on - strand at 4426.112 kb on - strand at 4426.115 kb on - strand at 4426.458 kb on + strand at 4426.480 kb on + strand at 4426.481 kb on - strand at 4426.493 kb on + strand at 4426.540 kb on - strand at 4426.543 kb on - strand at 4426.543 kb on - strand at 4426.699 kb on - strand, within CA264_19045 at 4426.703 kb on - strand, within CA264_19045 at 4426.867 kb on + strand, within CA264_19045 at 4427.042 kb on + strand, within CA264_19045 at 4427.096 kb on + strand, within CA264_19045 at 4427.155 kb on - strand, within CA264_19045 at 4427.304 kb on - strand, within CA264_19045 at 4427.339 kb on - strand, within CA264_19045 at 4427.391 kb on + strand, within CA264_19045 at 4427.700 kb on - strand at 4427.703 kb on + strand at 4427.703 kb on + strand at 4427.749 kb on + strand at 4427.767 kb on + strand at 4427.833 kb on - strand at 4427.844 kb on + strand at 4427.844 kb on + strand at 4427.845 kb on - strand at 4427.845 kb on - strand at 4428.590 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 4,426,112 - -0.4 4,426,112 - -0.2 4,426,115 - -0.1 4,426,458 + +0.8 4,426,480 + +1.1 4,426,481 - +0.3 4,426,493 + -1.0 4,426,540 - +1.8 4,426,543 - -0.2 4,426,543 - +0.4 4,426,699 - CA264_19045 0.21 -0.2 4,426,703 - CA264_19045 0.22 -0.7 4,426,867 + CA264_19045 0.36 -0.5 4,427,042 + CA264_19045 0.51 +0.6 4,427,096 + CA264_19045 0.56 +1.0 4,427,155 - CA264_19045 0.61 -0.8 4,427,304 - CA264_19045 0.74 +1.2 4,427,339 - CA264_19045 0.77 -0.3 4,427,391 + CA264_19045 0.82 +0.2 4,427,700 - +0.8 4,427,703 + +0.8 4,427,703 + -1.6 4,427,749 + -0.5 4,427,767 + +0.8 4,427,833 - -0.7 4,427,844 + -2.6 4,427,844 + -0.8 4,427,845 - -0.2 4,427,845 - -1.2 4,428,590 + -0.8
Or see this region's nucleotide sequence