Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_17460 and CA264_17465 are separated by 273 nucleotides CA264_17465 and CA264_17470 are separated by 104 nucleotides CA264_17470 and CA264_17475 are separated by 33 nucleotides
CA264_17460: CA264_17460 - hypothetical protein, at 4,069,460 to 4,070,974
_17460
CA264_17465: CA264_17465 - hypothetical protein, at 4,071,248 to 4,071,571
_17465
CA264_17470: CA264_17470 - hypothetical protein, at 4,071,676 to 4,072,308
_17470
CA264_17475: CA264_17475 - DNA replication and repair protein RecF, at 4,072,342 to 4,073,454
_17475
Position (kb)
4071
4072
4073 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4070.769 kb on + strand, within CA264_17460 at 4070.774 kb on - strand, within CA264_17460 at 4070.774 kb on - strand, within CA264_17460 at 4070.846 kb on - strand at 4070.922 kb on + strand at 4070.957 kb on - strand at 4070.957 kb on - strand at 4070.961 kb on - strand at 4071.017 kb on + strand at 4071.018 kb on - strand at 4071.018 kb on - strand at 4071.027 kb on + strand at 4071.027 kb on + strand at 4071.142 kb on + strand at 4071.184 kb on - strand at 4071.184 kb on - strand at 4071.196 kb on + strand at 4071.197 kb on - strand at 4071.585 kb on - strand at 4071.585 kb on - strand at 4071.617 kb on + strand at 4071.619 kb on + strand at 4071.641 kb on - strand at 4071.645 kb on + strand at 4071.645 kb on + strand at 4071.645 kb on + strand at 4071.645 kb on + strand at 4071.646 kb on - strand at 4071.650 kb on + strand at 4071.650 kb on + strand at 4071.650 kb on + strand at 4071.650 kb on + strand at 4071.650 kb on + strand at 4071.651 kb on - strand at 4071.651 kb on - strand at 4071.651 kb on - strand at 4071.651 kb on - strand at 4071.714 kb on + strand at 4071.714 kb on + strand at 4071.715 kb on - strand at 4071.727 kb on + strand at 4071.727 kb on + strand at 4071.727 kb on + strand at 4071.735 kb on + strand at 4071.751 kb on + strand, within CA264_17470 at 4071.751 kb on + strand, within CA264_17470 at 4071.752 kb on - strand, within CA264_17470 at 4071.818 kb on - strand, within CA264_17470 at 4071.820 kb on - strand, within CA264_17470 at 4071.820 kb on - strand, within CA264_17470 at 4071.820 kb on - strand, within CA264_17470 at 4071.862 kb on - strand, within CA264_17470 at 4071.874 kb on + strand, within CA264_17470 at 4071.874 kb on + strand, within CA264_17470 at 4071.875 kb on - strand, within CA264_17470 at 4071.875 kb on - strand, within CA264_17470 at 4071.880 kb on + strand, within CA264_17470 at 4071.902 kb on + strand, within CA264_17470 at 4071.931 kb on - strand, within CA264_17470 at 4071.944 kb on - strand, within CA264_17470 at 4071.944 kb on - strand, within CA264_17470 at 4071.954 kb on + strand, within CA264_17470 at 4071.954 kb on + strand, within CA264_17470 at 4071.954 kb on + strand, within CA264_17470 at 4071.954 kb on + strand, within CA264_17470 at 4071.954 kb on + strand, within CA264_17470 at 4071.954 kb on + strand, within CA264_17470 at 4071.954 kb on + strand, within CA264_17470 at 4071.955 kb on - strand, within CA264_17470 at 4071.955 kb on - strand, within CA264_17470 at 4071.955 kb on - strand, within CA264_17470 at 4071.955 kb on - strand, within CA264_17470 at 4071.955 kb on - strand, within CA264_17470 at 4071.993 kb on + strand, within CA264_17470 at 4071.993 kb on + strand, within CA264_17470 at 4071.994 kb on - strand, within CA264_17470 at 4072.009 kb on + strand, within CA264_17470 at 4072.039 kb on - strand, within CA264_17470 at 4072.042 kb on + strand, within CA264_17470 at 4072.043 kb on - strand, within CA264_17470 at 4072.043 kb on - strand, within CA264_17470 at 4072.043 kb on - strand, within CA264_17470 at 4072.065 kb on + strand, within CA264_17470 at 4072.066 kb on - strand, within CA264_17470 at 4072.090 kb on + strand, within CA264_17470 at 4072.090 kb on + strand, within CA264_17470 at 4072.091 kb on - strand, within CA264_17470 at 4072.147 kb on + strand, within CA264_17470 at 4072.147 kb on + strand, within CA264_17470 at 4072.147 kb on + strand, within CA264_17470 at 4072.147 kb on + strand, within CA264_17470 at 4072.148 kb on - strand, within CA264_17470 at 4072.148 kb on - strand, within CA264_17470 at 4072.149 kb on + strand, within CA264_17470 at 4072.150 kb on - strand, within CA264_17470 at 4072.156 kb on + strand, within CA264_17470 at 4072.186 kb on + strand, within CA264_17470 at 4072.199 kb on + strand, within CA264_17470 at 4072.203 kb on + strand, within CA264_17470 at 4072.204 kb on - strand, within CA264_17470 at 4072.204 kb on - strand, within CA264_17470 at 4072.262 kb on - strand at 4072.270 kb on + strand at 4072.270 kb on + strand at 4072.344 kb on - strand at 4072.396 kb on - strand at 4072.577 kb on - strand, within CA264_17475 at 4072.610 kb on + strand, within CA264_17475 at 4072.778 kb on + strand, within CA264_17475 at 4072.789 kb on + strand, within CA264_17475 at 4072.820 kb on + strand, within CA264_17475 at 4072.988 kb on + strand, within CA264_17475 at 4072.988 kb on + strand, within CA264_17475 at 4072.988 kb on + strand, within CA264_17475 at 4072.989 kb on - strand, within CA264_17475 at 4073.201 kb on - strand, within CA264_17475
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 4,070,769 + CA264_17460 0.86 +0.8 4,070,774 - CA264_17460 0.87 +0.0 4,070,774 - CA264_17460 0.87 -0.5 4,070,846 - -0.7 4,070,922 + -0.2 4,070,957 - -0.1 4,070,957 - -0.5 4,070,961 - +0.1 4,071,017 + -0.7 4,071,018 - -0.2 4,071,018 - -0.1 4,071,027 + +0.2 4,071,027 + -0.4 4,071,142 + +0.1 4,071,184 - -0.6 4,071,184 - -0.8 4,071,196 + +0.6 4,071,197 - -0.0 4,071,585 - +2.3 4,071,585 - -0.3 4,071,617 + -2.2 4,071,619 + +0.6 4,071,641 - -0.2 4,071,645 + -0.4 4,071,645 + -1.0 4,071,645 + +0.2 4,071,645 + -0.5 4,071,646 - -1.5 4,071,650 + +0.1 4,071,650 + +1.1 4,071,650 + -0.4 4,071,650 + -0.6 4,071,650 + -0.9 4,071,651 - -1.8 4,071,651 - +0.8 4,071,651 - -1.0 4,071,651 - -1.5 4,071,714 + -0.2 4,071,714 + -0.6 4,071,715 - -1.5 4,071,727 + +0.5 4,071,727 + +0.8 4,071,727 + -1.2 4,071,735 + -1.2 4,071,751 + CA264_17470 0.12 -1.5 4,071,751 + CA264_17470 0.12 -0.4 4,071,752 - CA264_17470 0.12 +0.0 4,071,818 - CA264_17470 0.22 -0.9 4,071,820 - CA264_17470 0.23 -2.2 4,071,820 - CA264_17470 0.23 +0.3 4,071,820 - CA264_17470 0.23 -1.1 4,071,862 - CA264_17470 0.29 +0.3 4,071,874 + CA264_17470 0.31 -0.7 4,071,874 + CA264_17470 0.31 -0.8 4,071,875 - CA264_17470 0.31 -1.2 4,071,875 - CA264_17470 0.31 +2.2 4,071,880 + CA264_17470 0.32 +0.1 4,071,902 + CA264_17470 0.36 -0.0 4,071,931 - CA264_17470 0.40 -0.6 4,071,944 - CA264_17470 0.42 +0.1 4,071,944 - CA264_17470 0.42 -2.5 4,071,954 + CA264_17470 0.44 -0.5 4,071,954 + CA264_17470 0.44 -1.5 4,071,954 + CA264_17470 0.44 -1.1 4,071,954 + CA264_17470 0.44 -0.3 4,071,954 + CA264_17470 0.44 -0.6 4,071,954 + CA264_17470 0.44 -0.2 4,071,954 + CA264_17470 0.44 +0.3 4,071,955 - CA264_17470 0.44 -0.8 4,071,955 - CA264_17470 0.44 -0.7 4,071,955 - CA264_17470 0.44 -1.7 4,071,955 - CA264_17470 0.44 -1.2 4,071,955 - CA264_17470 0.44 -0.7 4,071,993 + CA264_17470 0.50 +0.3 4,071,993 + CA264_17470 0.50 -0.4 4,071,994 - CA264_17470 0.50 -1.3 4,072,009 + CA264_17470 0.53 -0.3 4,072,039 - CA264_17470 0.57 -1.3 4,072,042 + CA264_17470 0.58 -1.2 4,072,043 - CA264_17470 0.58 -0.6 4,072,043 - CA264_17470 0.58 -0.8 4,072,043 - CA264_17470 0.58 +0.0 4,072,065 + CA264_17470 0.61 -0.5 4,072,066 - CA264_17470 0.62 -0.7 4,072,090 + CA264_17470 0.65 -0.7 4,072,090 + CA264_17470 0.65 -0.3 4,072,091 - CA264_17470 0.66 -1.0 4,072,147 + CA264_17470 0.74 -0.4 4,072,147 + CA264_17470 0.74 -0.9 4,072,147 + CA264_17470 0.74 +2.4 4,072,147 + CA264_17470 0.74 -0.8 4,072,148 - CA264_17470 0.75 -0.7 4,072,148 - CA264_17470 0.75 -1.1 4,072,149 + CA264_17470 0.75 +0.3 4,072,150 - CA264_17470 0.75 -0.6 4,072,156 + CA264_17470 0.76 -1.2 4,072,186 + CA264_17470 0.81 -0.7 4,072,199 + CA264_17470 0.83 +0.8 4,072,203 + CA264_17470 0.83 -1.6 4,072,204 - CA264_17470 0.83 -1.1 4,072,204 - CA264_17470 0.83 -0.6 4,072,262 - -0.9 4,072,270 + -2.3 4,072,270 + -0.6 4,072,344 - -2.0 4,072,396 - -1.0 4,072,577 - CA264_17475 0.21 -0.1 4,072,610 + CA264_17475 0.24 -0.2 4,072,778 + CA264_17475 0.39 -0.2 4,072,789 + CA264_17475 0.40 -1.8 4,072,820 + CA264_17475 0.43 -1.5 4,072,988 + CA264_17475 0.58 -0.2 4,072,988 + CA264_17475 0.58 -0.8 4,072,988 + CA264_17475 0.58 +0.6 4,072,989 - CA264_17475 0.58 +0.5 4,073,201 - CA264_17475 0.77 +0.5
Or see this region's nucleotide sequence