Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13150 and CA264_13155 are separated by 382 nucleotides CA264_13155 and CA264_13160 are separated by 52 nucleotides CA264_13160 and CA264_13165 are separated by 69 nucleotides
CA264_13150: CA264_13150 - hypothetical protein, at 3,065,339 to 3,065,869
_13150
CA264_13155: CA264_13155 - response regulator, at 3,066,252 to 3,066,683
_13155
CA264_13160: CA264_13160 - hypothetical protein, at 3,066,736 to 3,067,341
_13160
CA264_13165: CA264_13165 - arylesterase, at 3,067,411 to 3,067,962
_13165
Position (kb)
3066
3067 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3065.277 kb on - strand at 3065.277 kb on - strand at 3065.277 kb on - strand at 3065.319 kb on - strand at 3065.325 kb on + strand at 3065.338 kb on + strand at 3065.457 kb on + strand, within CA264_13150 at 3065.457 kb on + strand, within CA264_13150 at 3065.457 kb on + strand, within CA264_13150 at 3065.539 kb on + strand, within CA264_13150 at 3065.540 kb on - strand, within CA264_13150 at 3065.641 kb on - strand, within CA264_13150 at 3065.748 kb on + strand, within CA264_13150 at 3065.819 kb on + strand at 3065.820 kb on - strand at 3065.862 kb on - strand at 3065.891 kb on - strand at 3065.901 kb on + strand at 3065.955 kb on + strand at 3065.969 kb on - strand at 3066.045 kb on - strand at 3066.074 kb on - strand at 3066.101 kb on + strand at 3066.101 kb on + strand at 3066.109 kb on + strand at 3066.132 kb on - strand at 3066.134 kb on - strand at 3066.143 kb on + strand at 3066.192 kb on - strand at 3066.226 kb on - strand at 3066.256 kb on - strand at 3066.296 kb on - strand, within CA264_13155 at 3066.317 kb on + strand, within CA264_13155 at 3066.342 kb on - strand, within CA264_13155 at 3066.350 kb on - strand, within CA264_13155 at 3066.489 kb on + strand, within CA264_13155 at 3066.562 kb on + strand, within CA264_13155 at 3066.579 kb on + strand, within CA264_13155 at 3066.600 kb on - strand, within CA264_13155 at 3066.663 kb on - strand at 3066.695 kb on - strand at 3066.730 kb on + strand at 3066.730 kb on + strand at 3066.731 kb on - strand at 3066.744 kb on + strand at 3066.744 kb on + strand at 3066.752 kb on + strand at 3066.837 kb on + strand, within CA264_13160 at 3066.890 kb on + strand, within CA264_13160 at 3066.891 kb on - strand, within CA264_13160 at 3066.966 kb on + strand, within CA264_13160 at 3067.003 kb on + strand, within CA264_13160 at 3067.045 kb on + strand, within CA264_13160 at 3067.047 kb on + strand, within CA264_13160 at 3067.047 kb on + strand, within CA264_13160 at 3067.047 kb on + strand, within CA264_13160 at 3067.047 kb on + strand, within CA264_13160 at 3067.048 kb on - strand, within CA264_13160 at 3067.052 kb on + strand, within CA264_13160 at 3067.052 kb on + strand, within CA264_13160 at 3067.052 kb on + strand, within CA264_13160 at 3067.337 kb on + strand at 3067.337 kb on + strand at 3067.338 kb on - strand at 3067.338 kb on - strand at 3067.340 kb on - strand at 3067.340 kb on - strand at 3067.440 kb on + strand at 3067.441 kb on - strand at 3067.539 kb on + strand, within CA264_13165 at 3067.546 kb on + strand, within CA264_13165 at 3067.547 kb on - strand, within CA264_13165 at 3067.547 kb on - strand, within CA264_13165 at 3067.576 kb on + strand, within CA264_13165 at 3067.641 kb on + strand, within CA264_13165
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 3,065,277 - +0.5 3,065,277 - -0.4 3,065,277 - -0.1 3,065,319 - -0.1 3,065,325 + -0.5 3,065,338 + -0.9 3,065,457 + CA264_13150 0.22 -0.3 3,065,457 + CA264_13150 0.22 +0.5 3,065,457 + CA264_13150 0.22 -0.3 3,065,539 + CA264_13150 0.38 -1.1 3,065,540 - CA264_13150 0.38 -0.3 3,065,641 - CA264_13150 0.57 -0.7 3,065,748 + CA264_13150 0.77 -0.7 3,065,819 + +0.7 3,065,820 - +1.7 3,065,862 - +0.7 3,065,891 - -0.4 3,065,901 + -0.7 3,065,955 + -3.1 3,065,969 - -0.5 3,066,045 - -1.2 3,066,074 - -0.3 3,066,101 + -1.6 3,066,101 + -1.9 3,066,109 + -1.6 3,066,132 - -0.3 3,066,134 - +0.3 3,066,143 + -0.9 3,066,192 - -0.7 3,066,226 - +1.1 3,066,256 - +0.0 3,066,296 - CA264_13155 0.10 -1.6 3,066,317 + CA264_13155 0.15 +0.1 3,066,342 - CA264_13155 0.21 -0.1 3,066,350 - CA264_13155 0.23 -0.8 3,066,489 + CA264_13155 0.55 -0.8 3,066,562 + CA264_13155 0.72 -0.6 3,066,579 + CA264_13155 0.76 -0.1 3,066,600 - CA264_13155 0.81 -0.7 3,066,663 - +1.3 3,066,695 - -0.4 3,066,730 + -0.4 3,066,730 + +0.0 3,066,731 - +0.3 3,066,744 + +3.5 3,066,744 + +1.7 3,066,752 + -0.9 3,066,837 + CA264_13160 0.17 -0.2 3,066,890 + CA264_13160 0.25 +0.3 3,066,891 - CA264_13160 0.26 +2.7 3,066,966 + CA264_13160 0.38 -0.1 3,067,003 + CA264_13160 0.44 +1.7 3,067,045 + CA264_13160 0.51 -1.1 3,067,047 + CA264_13160 0.51 -1.3 3,067,047 + CA264_13160 0.51 -0.7 3,067,047 + CA264_13160 0.51 +0.9 3,067,047 + CA264_13160 0.51 -0.5 3,067,048 - CA264_13160 0.51 +0.7 3,067,052 + CA264_13160 0.52 -0.6 3,067,052 + CA264_13160 0.52 +0.1 3,067,052 + CA264_13160 0.52 -0.3 3,067,337 + +0.2 3,067,337 + +0.6 3,067,338 - -0.9 3,067,338 - +1.0 3,067,340 - -0.3 3,067,340 - -1.0 3,067,440 + -1.0 3,067,441 - +1.6 3,067,539 + CA264_13165 0.23 -1.6 3,067,546 + CA264_13165 0.24 +0.1 3,067,547 - CA264_13165 0.25 -0.3 3,067,547 - CA264_13165 0.25 +0.4 3,067,576 + CA264_13165 0.30 -0.5 3,067,641 + CA264_13165 0.42 +0.0
Or see this region's nucleotide sequence