Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12160

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12155 and CA264_12160 are separated by 315 nucleotidesCA264_12160 and CA264_12165 overlap by 17 nucleotides CA264_12155: CA264_12155 - histidine phosphatase family protein, at 2,835,141 to 2,835,725 _12155 CA264_12160: CA264_12160 - transcriptional regulator, at 2,836,041 to 2,836,439 _12160 CA264_12165: CA264_12165 - hypothetical protein, at 2,836,423 to 2,837,733 _12165 Position (kb) 2836 2837Strain fitness (log2 ratio) -2 -1 0 1 2at 2835.243 kb on + strand, within CA264_12155at 2835.245 kb on + strand, within CA264_12155at 2836.020 kb on + strandat 2836.149 kb on + strand, within CA264_12160at 2836.230 kb on + strand, within CA264_12160at 2836.433 kb on + strandat 2836.434 kb on - strandat 2836.441 kb on + strandat 2836.442 kb on - strandat 2836.442 kb on - strandat 2836.534 kb on + strandat 2836.592 kb on + strand, within CA264_12165at 2836.837 kb on + strand, within CA264_12165at 2836.837 kb on + strand, within CA264_12165at 2836.881 kb on + strand, within CA264_12165at 2837.115 kb on + strand, within CA264_12165at 2837.116 kb on - strand, within CA264_12165at 2837.145 kb on + strand, within CA264_12165at 2837.145 kb on + strand, within CA264_12165at 2837.146 kb on - strand, within CA264_12165at 2837.146 kb on - strand, within CA264_12165at 2837.175 kb on + strand, within CA264_12165at 2837.194 kb on - strand, within CA264_12165at 2837.240 kb on + strand, within CA264_12165at 2837.339 kb on + strand, within CA264_12165at 2837.423 kb on - strand, within CA264_12165at 2837.423 kb on - strand, within CA264_12165at 2837.424 kb on + strand, within CA264_12165at 2837.425 kb on - strand, within CA264_12165at 2837.428 kb on + strand, within CA264_12165

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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2,835,243 + CA264_12155 0.17 +0.7
2,835,245 + CA264_12155 0.18 -0.7
2,836,020 + +0.4
2,836,149 + CA264_12160 0.27 -0.4
2,836,230 + CA264_12160 0.47 -0.9
2,836,433 + +1.8
2,836,434 - +0.8
2,836,441 + +0.4
2,836,442 - +0.2
2,836,442 - -0.1
2,836,534 + +0.0
2,836,592 + CA264_12165 0.13 +1.2
2,836,837 + CA264_12165 0.32 +1.2
2,836,837 + CA264_12165 0.32 -0.4
2,836,881 + CA264_12165 0.35 +0.2
2,837,115 + CA264_12165 0.53 +1.7
2,837,116 - CA264_12165 0.53 +0.9
2,837,145 + CA264_12165 0.55 -1.2
2,837,145 + CA264_12165 0.55 -0.1
2,837,146 - CA264_12165 0.55 -0.5
2,837,146 - CA264_12165 0.55 -0.1
2,837,175 + CA264_12165 0.57 +1.1
2,837,194 - CA264_12165 0.59 +0.2
2,837,240 + CA264_12165 0.62 -0.1
2,837,339 + CA264_12165 0.70 -0.2
2,837,423 - CA264_12165 0.76 +1.2
2,837,423 - CA264_12165 0.76 -0.1
2,837,424 + CA264_12165 0.76 -2.1
2,837,425 - CA264_12165 0.76 -0.7
2,837,428 + CA264_12165 0.77 -0.1

Or see this region's nucleotide sequence