Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12160
Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Nalidixic 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,835,243 | + | CA264_12155 | 0.17 | +0.7 | |
2,835,245 | + | CA264_12155 | 0.18 | -0.7 | |
2,836,020 | + | +0.4 | |||
2,836,149 | + | CA264_12160 | 0.27 | -0.4 | |
2,836,230 | + | CA264_12160 | 0.47 | -0.9 | |
2,836,433 | + | +1.8 | |||
2,836,434 | - | +0.8 | |||
2,836,441 | + | +0.4 | |||
2,836,442 | - | +0.2 | |||
2,836,442 | - | -0.1 | |||
2,836,534 | + | +0.0 | |||
2,836,592 | + | CA264_12165 | 0.13 | +1.2 | |
2,836,837 | + | CA264_12165 | 0.32 | +1.2 | |
2,836,837 | + | CA264_12165 | 0.32 | -0.4 | |
2,836,881 | + | CA264_12165 | 0.35 | +0.2 | |
2,837,115 | + | CA264_12165 | 0.53 | +1.7 | |
2,837,116 | - | CA264_12165 | 0.53 | +0.9 | |
2,837,145 | + | CA264_12165 | 0.55 | -1.2 | |
2,837,145 | + | CA264_12165 | 0.55 | -0.1 | |
2,837,146 | - | CA264_12165 | 0.55 | -0.5 | |
2,837,146 | - | CA264_12165 | 0.55 | -0.1 | |
2,837,175 | + | CA264_12165 | 0.57 | +1.1 | |
2,837,194 | - | CA264_12165 | 0.59 | +0.2 | |
2,837,240 | + | CA264_12165 | 0.62 | -0.1 | |
2,837,339 | + | CA264_12165 | 0.70 | -0.2 | |
2,837,423 | - | CA264_12165 | 0.76 | +1.2 | |
2,837,423 | - | CA264_12165 | 0.76 | -0.1 | |
2,837,424 | + | CA264_12165 | 0.76 | -2.1 | |
2,837,425 | - | CA264_12165 | 0.76 | -0.7 | |
2,837,428 | + | CA264_12165 | 0.77 | -0.1 |
Or see this region's nucleotide sequence