Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11605

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11600 and CA264_11605 are separated by 67 nucleotidesCA264_11605 and CA264_11610 are separated by 959 nucleotides CA264_11600: CA264_11600 - SusC/RagA family TonB-linked outer membrane protein, at 2,701,028 to 2,704,126 _11600 CA264_11605: CA264_11605 - hypothetical protein, at 2,704,194 to 2,704,397 _11605 CA264_11610: CA264_11610 - RagB/SusD family nutrient uptake outer membrane protein, at 2,705,357 to 2,706,814 _11610 Position (kb) 2704 2705Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2703.217 kb on + strand, within CA264_11600at 2703.218 kb on - strand, within CA264_11600at 2703.286 kb on + strand, within CA264_11600at 2703.295 kb on + strand, within CA264_11600at 2703.340 kb on + strand, within CA264_11600at 2703.340 kb on + strand, within CA264_11600at 2703.351 kb on + strand, within CA264_11600at 2703.351 kb on + strand, within CA264_11600at 2703.351 kb on + strand, within CA264_11600at 2703.351 kb on + strand, within CA264_11600at 2703.352 kb on - strand, within CA264_11600at 2703.720 kb on - strand, within CA264_11600at 2703.751 kb on + strand, within CA264_11600at 2703.752 kb on - strand, within CA264_11600at 2703.839 kb on + strandat 2703.840 kb on - strandat 2703.862 kb on + strandat 2703.863 kb on - strandat 2703.871 kb on + strandat 2703.875 kb on + strandat 2703.875 kb on + strandat 2703.875 kb on + strandat 2703.876 kb on - strandat 2703.892 kb on - strandat 2703.897 kb on - strandat 2703.989 kb on + strandat 2704.011 kb on - strandat 2704.011 kb on - strandat 2704.083 kb on - strandat 2704.083 kb on - strandat 2704.083 kb on - strandat 2704.107 kb on - strandat 2704.107 kb on - strandat 2704.107 kb on - strandat 2704.137 kb on + strandat 2704.138 kb on - strandat 2704.138 kb on - strandat 2704.179 kb on - strandat 2704.181 kb on + strandat 2704.182 kb on - strandat 2704.207 kb on - strandat 2704.232 kb on + strand, within CA264_11605at 2704.260 kb on - strand, within CA264_11605at 2704.288 kb on - strand, within CA264_11605at 2704.368 kb on + strand, within CA264_11605at 2704.410 kb on + strandat 2704.494 kb on - strandat 2704.545 kb on - strandat 2704.600 kb on + strandat 2704.689 kb on - strandat 2704.699 kb on + strandat 2704.701 kb on + strandat 2704.701 kb on + strandat 2704.701 kb on + strandat 2704.702 kb on - strandat 2704.702 kb on - strandat 2704.835 kb on + strandat 2704.835 kb on + strandat 2704.842 kb on - strandat 2704.842 kb on - strandat 2704.842 kb on - strandat 2704.871 kb on - strandat 2704.918 kb on + strandat 2704.918 kb on + strandat 2704.918 kb on + strandat 2704.919 kb on - strandat 2704.924 kb on + strandat 2704.924 kb on + strandat 2704.925 kb on - strandat 2704.996 kb on + strandat 2704.996 kb on + strandat 2705.028 kb on + strandat 2705.032 kb on + strandat 2705.041 kb on + strandat 2705.042 kb on - strandat 2705.079 kb on + strandat 2705.082 kb on - strandat 2705.082 kb on - strandat 2705.082 kb on - strandat 2705.111 kb on - strandat 2705.129 kb on + strandat 2705.195 kb on + strandat 2705.217 kb on - strandat 2705.273 kb on + strandat 2705.273 kb on + strandat 2705.342 kb on + strandat 2705.358 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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2,703,217 + CA264_11600 0.71 +0.8
2,703,218 - CA264_11600 0.71 -0.4
2,703,286 + CA264_11600 0.73 +0.6
2,703,295 + CA264_11600 0.73 -1.2
2,703,340 + CA264_11600 0.75 -0.1
2,703,340 + CA264_11600 0.75 -0.2
2,703,351 + CA264_11600 0.75 +1.6
2,703,351 + CA264_11600 0.75 -0.4
2,703,351 + CA264_11600 0.75 -0.2
2,703,351 + CA264_11600 0.75 -0.9
2,703,352 - CA264_11600 0.75 +0.1
2,703,720 - CA264_11600 0.87 +0.9
2,703,751 + CA264_11600 0.88 -0.4
2,703,752 - CA264_11600 0.88 -0.2
2,703,839 + +0.8
2,703,840 - -1.2
2,703,862 + -0.4
2,703,863 - -1.1
2,703,871 + +0.2
2,703,875 + +0.5
2,703,875 + -1.0
2,703,875 + -0.9
2,703,876 - -0.1
2,703,892 - -0.2
2,703,897 - -1.2
2,703,989 + -0.4
2,704,011 - -0.1
2,704,011 - -1.0
2,704,083 - +0.4
2,704,083 - -0.7
2,704,083 - -0.6
2,704,107 - -2.7
2,704,107 - -1.2
2,704,107 - +0.2
2,704,137 + -0.2
2,704,138 - -0.6
2,704,138 - -0.5
2,704,179 - -1.8
2,704,181 + +0.8
2,704,182 - +1.4
2,704,207 - -0.0
2,704,232 + CA264_11605 0.19 -0.1
2,704,260 - CA264_11605 0.32 -0.8
2,704,288 - CA264_11605 0.46 -0.6
2,704,368 + CA264_11605 0.85 -1.3
2,704,410 + +0.2
2,704,494 - +0.0
2,704,545 - -2.9
2,704,600 + -1.1
2,704,689 - -0.6
2,704,699 + -0.6
2,704,701 + +0.1
2,704,701 + +0.5
2,704,701 + -1.1
2,704,702 - -0.8
2,704,702 - -1.3
2,704,835 + -0.5
2,704,835 + -0.6
2,704,842 - +0.0
2,704,842 - -0.6
2,704,842 - -0.2
2,704,871 - +0.4
2,704,918 + -0.4
2,704,918 + +3.4
2,704,918 + -0.2
2,704,919 - -1.0
2,704,924 + -0.1
2,704,924 + -1.2
2,704,925 - +0.5
2,704,996 + +0.3
2,704,996 + +1.2
2,705,028 + +0.5
2,705,032 + +0.2
2,705,041 + -0.5
2,705,042 - +1.0
2,705,079 + -0.5
2,705,082 - -1.3
2,705,082 - +1.8
2,705,082 - -1.8
2,705,111 - -0.8
2,705,129 + +1.8
2,705,195 + -0.5
2,705,217 - -0.1
2,705,273 + +0.7
2,705,273 + +0.1
2,705,342 + -0.4
2,705,358 + -0.4

Or see this region's nucleotide sequence