Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10825

Experiment: m.b. Nalidixic 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_10815 and CA264_10820 are separated by 13 nucleotidesCA264_10820 and CA264_10825 overlap by 14 nucleotidesCA264_10825 and CA264_10830 overlap by 4 nucleotides CA264_10815: CA264_10815 - cell division protein FtsA, at 2,499,637 to 2,500,944 _10815 CA264_10820: CA264_10820 - hypothetical protein, at 2,500,958 to 2,501,719 _10820 CA264_10825: CA264_10825 - UDP-N-acetylmuramate--L-alanine ligase, at 2,501,706 to 2,503,115 _10825 CA264_10830: CA264_10830 - undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase, at 2,503,112 to 2,504,224 _10830 Position (kb) 2501 2502 2503 2504Strain fitness (log2 ratio) -2 -1 0 1at 2500.927 kb on + strandat 2500.945 kb on - strandat 2500.951 kb on + strandat 2500.951 kb on + strandat 2500.952 kb on - strandat 2500.952 kb on - strandat 2500.952 kb on - strandat 2500.952 kb on - strandat 2500.954 kb on - strandat 2501.734 kb on - strandat 2502.353 kb on - strand, within CA264_10825at 2502.515 kb on - strand, within CA264_10825at 2502.515 kb on - strand, within CA264_10825at 2502.517 kb on - strand, within CA264_10825at 2502.604 kb on - strand, within CA264_10825at 2502.773 kb on + strand, within CA264_10825at 2503.088 kb on - strandat 2503.093 kb on + strandat 2503.093 kb on + strandat 2503.094 kb on - strandat 2503.097 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
remove
2,500,927 + -0.1
2,500,945 - +0.2
2,500,951 + -2.1
2,500,951 + -0.2
2,500,952 - -1.1
2,500,952 - +0.4
2,500,952 - -0.1
2,500,952 - -0.6
2,500,954 - -1.6
2,501,734 - -2.7
2,502,353 - CA264_10825 0.46 -0.8
2,502,515 - CA264_10825 0.57 -1.6
2,502,515 - CA264_10825 0.57 -2.6
2,502,517 - CA264_10825 0.58 -1.4
2,502,604 - CA264_10825 0.64 -2.4
2,502,773 + CA264_10825 0.76 -2.5
2,503,088 - -2.0
2,503,093 + +0.1
2,503,093 + -1.4
2,503,094 - -0.8
2,503,097 + -0.3

Or see this region's nucleotide sequence