Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10635

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10625 and CA264_10630 are separated by 216 nucleotidesCA264_10630 and CA264_10635 are separated by 8 nucleotidesCA264_10635 and CA264_10640 are separated by 155 nucleotidesCA264_10640 and CA264_10645 are separated by 386 nucleotides CA264_10625: CA264_10625 - glyoxalase/bleomycin resistance/dioxygenase family protein, at 2,457,030 to 2,457,443 _10625 CA264_10630: CA264_10630 - bile acid 7-alpha-dehydratase, at 2,457,660 to 2,458,100 _10630 CA264_10635: CA264_10635 - NADPH:quinone reductase, at 2,458,109 to 2,459,107 _10635 CA264_10640: CA264_10640 - transcriptional regulator, at 2,459,263 to 2,459,616 _10640 CA264_10645: CA264_10645 - hypothetical protein, at 2,460,003 to 2,461,289 _10645 Position (kb) 2458 2459 2460Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2457.170 kb on + strand, within CA264_10625at 2457.171 kb on - strand, within CA264_10625at 2457.194 kb on + strand, within CA264_10625at 2457.201 kb on - strand, within CA264_10625at 2457.227 kb on + strand, within CA264_10625at 2457.227 kb on + strand, within CA264_10625at 2457.228 kb on - strand, within CA264_10625at 2457.291 kb on + strand, within CA264_10625at 2457.291 kb on + strand, within CA264_10625at 2457.291 kb on + strand, within CA264_10625at 2457.359 kb on - strand, within CA264_10625at 2457.364 kb on + strand, within CA264_10625at 2457.365 kb on - strand, within CA264_10625at 2457.441 kb on + strandat 2457.454 kb on + strandat 2457.454 kb on + strandat 2457.455 kb on - strandat 2457.471 kb on - strandat 2457.490 kb on + strandat 2457.492 kb on + strandat 2457.493 kb on - strandat 2457.513 kb on + strandat 2457.514 kb on - strandat 2457.538 kb on - strandat 2457.553 kb on + strandat 2457.557 kb on + strandat 2457.558 kb on - strandat 2457.558 kb on - strandat 2457.588 kb on - strandat 2457.611 kb on - strandat 2457.692 kb on + strandat 2457.703 kb on - strandat 2457.726 kb on - strand, within CA264_10630at 2457.758 kb on + strand, within CA264_10630at 2457.805 kb on - strand, within CA264_10630at 2457.813 kb on + strand, within CA264_10630at 2457.942 kb on + strand, within CA264_10630at 2457.943 kb on - strand, within CA264_10630at 2457.948 kb on - strand, within CA264_10630at 2457.969 kb on + strand, within CA264_10630at 2457.970 kb on - strand, within CA264_10630at 2458.029 kb on - strand, within CA264_10630at 2458.046 kb on + strand, within CA264_10630at 2458.084 kb on - strandat 2458.093 kb on - strandat 2458.095 kb on - strandat 2458.106 kb on - strandat 2458.106 kb on - strandat 2458.106 kb on - strandat 2458.120 kb on + strandat 2458.121 kb on - strandat 2458.121 kb on - strandat 2458.127 kb on + strandat 2458.139 kb on + strandat 2458.140 kb on - strandat 2458.141 kb on + strandat 2458.202 kb on + strandat 2458.203 kb on - strandat 2458.203 kb on - strandat 2458.204 kb on + strandat 2458.213 kb on + strand, within CA264_10635at 2458.213 kb on + strand, within CA264_10635at 2458.214 kb on - strand, within CA264_10635at 2458.271 kb on + strand, within CA264_10635at 2458.271 kb on + strand, within CA264_10635at 2458.376 kb on + strand, within CA264_10635at 2458.434 kb on - strand, within CA264_10635at 2458.461 kb on + strand, within CA264_10635at 2458.462 kb on - strand, within CA264_10635at 2458.528 kb on + strand, within CA264_10635at 2458.534 kb on - strand, within CA264_10635at 2458.596 kb on - strand, within CA264_10635at 2458.639 kb on + strand, within CA264_10635at 2458.679 kb on + strand, within CA264_10635at 2458.697 kb on - strand, within CA264_10635at 2458.700 kb on + strand, within CA264_10635at 2458.700 kb on + strand, within CA264_10635at 2458.700 kb on + strand, within CA264_10635at 2458.701 kb on - strand, within CA264_10635at 2458.758 kb on - strand, within CA264_10635at 2458.758 kb on - strand, within CA264_10635at 2458.758 kb on - strand, within CA264_10635at 2458.782 kb on + strand, within CA264_10635at 2458.782 kb on + strand, within CA264_10635at 2458.783 kb on - strand, within CA264_10635at 2458.783 kb on - strand, within CA264_10635at 2458.783 kb on - strand, within CA264_10635at 2458.791 kb on + strand, within CA264_10635at 2458.809 kb on + strand, within CA264_10635at 2458.833 kb on + strand, within CA264_10635at 2458.833 kb on + strand, within CA264_10635at 2458.834 kb on - strand, within CA264_10635at 2458.862 kb on + strand, within CA264_10635at 2458.863 kb on - strand, within CA264_10635at 2458.863 kb on - strand, within CA264_10635at 2458.863 kb on - strand, within CA264_10635at 2458.886 kb on + strand, within CA264_10635at 2458.886 kb on + strand, within CA264_10635at 2458.886 kb on + strand, within CA264_10635at 2458.897 kb on + strand, within CA264_10635at 2458.974 kb on + strand, within CA264_10635at 2459.012 kb on - strandat 2459.108 kb on + strandat 2459.114 kb on - strandat 2459.135 kb on + strandat 2459.221 kb on - strandat 2459.239 kb on - strandat 2459.341 kb on + strand, within CA264_10640at 2459.342 kb on - strand, within CA264_10640at 2459.362 kb on + strand, within CA264_10640at 2459.379 kb on + strand, within CA264_10640at 2459.424 kb on + strand, within CA264_10640at 2459.425 kb on - strand, within CA264_10640at 2459.471 kb on + strand, within CA264_10640at 2459.471 kb on + strand, within CA264_10640at 2459.472 kb on - strand, within CA264_10640at 2459.487 kb on - strand, within CA264_10640at 2459.510 kb on + strand, within CA264_10640at 2459.510 kb on + strand, within CA264_10640at 2459.515 kb on + strand, within CA264_10640at 2459.516 kb on - strand, within CA264_10640at 2459.516 kb on - strand, within CA264_10640at 2459.614 kb on + strandat 2459.618 kb on + strandat 2459.656 kb on - strandat 2459.658 kb on + strandat 2459.658 kb on + strandat 2459.658 kb on + strandat 2459.663 kb on + strandat 2459.670 kb on + strandat 2459.670 kb on + strandat 2459.671 kb on - strandat 2459.671 kb on - strandat 2459.671 kb on - strandat 2459.688 kb on + strandat 2459.738 kb on + strandat 2459.739 kb on - strandat 2459.750 kb on + strandat 2459.757 kb on + strandat 2459.757 kb on + strandat 2459.817 kb on - strandat 2459.840 kb on - strandat 2459.845 kb on + strandat 2459.850 kb on - strandat 2459.850 kb on - strandat 2459.850 kb on - strandat 2459.850 kb on - strandat 2459.861 kb on - strandat 2459.861 kb on - strandat 2459.863 kb on + strandat 2459.864 kb on - strandat 2459.864 kb on - strandat 2459.868 kb on - strandat 2459.874 kb on - strandat 2459.915 kb on - strandat 2459.990 kb on + strandat 2459.994 kb on - strandat 2459.999 kb on + strandat 2459.999 kb on + strandat 2460.000 kb on - strandat 2460.000 kb on - strandat 2460.093 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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2,457,170 + CA264_10625 0.34 -0.0
2,457,171 - CA264_10625 0.34 +0.6
2,457,194 + CA264_10625 0.40 +0.5
2,457,201 - CA264_10625 0.41 -1.2
2,457,227 + CA264_10625 0.48 -1.2
2,457,227 + CA264_10625 0.48 -0.6
2,457,228 - CA264_10625 0.48 -0.8
2,457,291 + CA264_10625 0.63 +0.3
2,457,291 + CA264_10625 0.63 +0.4
2,457,291 + CA264_10625 0.63 -0.2
2,457,359 - CA264_10625 0.79 +0.8
2,457,364 + CA264_10625 0.81 -0.7
2,457,365 - CA264_10625 0.81 +0.8
2,457,441 + -0.3
2,457,454 + -1.4
2,457,454 + -0.3
2,457,455 - +0.3
2,457,471 - +0.0
2,457,490 + +0.4
2,457,492 + -1.0
2,457,493 - +0.3
2,457,513 + +3.4
2,457,514 - -0.6
2,457,538 - +0.8
2,457,553 + -1.6
2,457,557 + +0.0
2,457,558 - +0.1
2,457,558 - -0.8
2,457,588 - -0.6
2,457,611 - -0.1
2,457,692 + +0.8
2,457,703 - +0.1
2,457,726 - CA264_10630 0.15 -0.2
2,457,758 + CA264_10630 0.22 +1.4
2,457,805 - CA264_10630 0.33 -1.4
2,457,813 + CA264_10630 0.35 -0.4
2,457,942 + CA264_10630 0.64 -0.3
2,457,943 - CA264_10630 0.64 -0.6
2,457,948 - CA264_10630 0.65 -1.2
2,457,969 + CA264_10630 0.70 +0.5
2,457,970 - CA264_10630 0.70 +0.3
2,458,029 - CA264_10630 0.84 -0.1
2,458,046 + CA264_10630 0.88 -0.1
2,458,084 - +1.8
2,458,093 - -1.6
2,458,095 - -0.8
2,458,106 - -0.8
2,458,106 - -0.5
2,458,106 - -0.3
2,458,120 + +0.4
2,458,121 - +1.5
2,458,121 - +0.1
2,458,127 + -0.2
2,458,139 + +0.1
2,458,140 - -0.9
2,458,141 + -0.0
2,458,202 + +0.1
2,458,203 - +0.1
2,458,203 - +0.4
2,458,204 + +0.8
2,458,213 + CA264_10635 0.10 -1.0
2,458,213 + CA264_10635 0.10 -0.8
2,458,214 - CA264_10635 0.11 +0.1
2,458,271 + CA264_10635 0.16 -0.5
2,458,271 + CA264_10635 0.16 +0.6
2,458,376 + CA264_10635 0.27 -0.2
2,458,434 - CA264_10635 0.33 +0.2
2,458,461 + CA264_10635 0.35 -0.5
2,458,462 - CA264_10635 0.35 -0.2
2,458,528 + CA264_10635 0.42 -1.6
2,458,534 - CA264_10635 0.43 -0.1
2,458,596 - CA264_10635 0.49 -0.9
2,458,639 + CA264_10635 0.53 +0.8
2,458,679 + CA264_10635 0.57 +0.4
2,458,697 - CA264_10635 0.59 +0.6
2,458,700 + CA264_10635 0.59 -1.5
2,458,700 + CA264_10635 0.59 +0.3
2,458,700 + CA264_10635 0.59 -0.4
2,458,701 - CA264_10635 0.59 +0.4
2,458,758 - CA264_10635 0.65 -1.3
2,458,758 - CA264_10635 0.65 -0.3
2,458,758 - CA264_10635 0.65 +0.4
2,458,782 + CA264_10635 0.67 +0.4
2,458,782 + CA264_10635 0.67 -0.6
2,458,783 - CA264_10635 0.67 -0.2
2,458,783 - CA264_10635 0.67 -0.8
2,458,783 - CA264_10635 0.67 +0.2
2,458,791 + CA264_10635 0.68 -0.1
2,458,809 + CA264_10635 0.70 +0.4
2,458,833 + CA264_10635 0.72 -0.7
2,458,833 + CA264_10635 0.72 -0.5
2,458,834 - CA264_10635 0.73 -1.4
2,458,862 + CA264_10635 0.75 -0.0
2,458,863 - CA264_10635 0.75 -1.3
2,458,863 - CA264_10635 0.75 -0.2
2,458,863 - CA264_10635 0.75 -0.2
2,458,886 + CA264_10635 0.78 +0.1
2,458,886 + CA264_10635 0.78 -1.0
2,458,886 + CA264_10635 0.78 -0.8
2,458,897 + CA264_10635 0.79 -1.2
2,458,974 + CA264_10635 0.87 -0.6
2,459,012 - +0.1
2,459,108 + -0.2
2,459,114 - +0.0
2,459,135 + +0.2
2,459,221 - -0.0
2,459,239 - +0.3
2,459,341 + CA264_10640 0.22 -0.1
2,459,342 - CA264_10640 0.22 +0.8
2,459,362 + CA264_10640 0.28 +0.3
2,459,379 + CA264_10640 0.33 +0.8
2,459,424 + CA264_10640 0.45 -1.3
2,459,425 - CA264_10640 0.46 -1.3
2,459,471 + CA264_10640 0.59 -1.4
2,459,471 + CA264_10640 0.59 -0.5
2,459,472 - CA264_10640 0.59 -1.0
2,459,487 - CA264_10640 0.63 +0.6
2,459,510 + CA264_10640 0.70 -0.3
2,459,510 + CA264_10640 0.70 +0.2
2,459,515 + CA264_10640 0.71 -0.4
2,459,516 - CA264_10640 0.71 +0.8
2,459,516 - CA264_10640 0.71 -0.1
2,459,614 + -1.6
2,459,618 + -0.2
2,459,656 - +0.0
2,459,658 + +0.4
2,459,658 + -0.3
2,459,658 + -0.7
2,459,663 + -0.4
2,459,670 + -0.3
2,459,670 + -1.2
2,459,671 - +0.8
2,459,671 - -0.2
2,459,671 - -0.3
2,459,688 + -0.7
2,459,738 + +0.0
2,459,739 - -0.2
2,459,750 + +0.4
2,459,757 + -0.4
2,459,757 + -0.2
2,459,817 - -0.2
2,459,840 - -1.8
2,459,845 + +0.2
2,459,850 - +0.0
2,459,850 - +2.1
2,459,850 - +0.3
2,459,850 - +1.0
2,459,861 - +0.5
2,459,861 - -0.5
2,459,863 + -0.7
2,459,864 - -0.7
2,459,864 - +1.4
2,459,868 - +0.8
2,459,874 - +0.2
2,459,915 - +1.8
2,459,990 + +1.6
2,459,994 - -0.6
2,459,999 + -1.8
2,459,999 + -0.1
2,460,000 - +2.0
2,460,000 - +0.1
2,460,093 + +0.9

Or see this region's nucleotide sequence