Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09740

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09735 and CA264_09740 are separated by 611 nucleotidesCA264_09740 and CA264_09745 are separated by 218 nucleotides CA264_09735: CA264_09735 - 5-hydroxyisourate hydrolase, at 2,260,609 to 2,261,016 _09735 CA264_09740: CA264_09740 - hypothetical protein, at 2,261,628 to 2,262,092 _09740 CA264_09745: CA264_09745 - IS3 family transposase, at 2,262,311 to 2,263,352 _09745 Position (kb) 2261 2262 2263Strain fitness (log2 ratio) -1 0 1 2at 2260.945 kb on - strand, within CA264_09735at 2260.961 kb on - strand, within CA264_09735at 2261.201 kb on + strandat 2261.336 kb on + strandat 2261.336 kb on + strandat 2261.436 kb on + strandat 2261.502 kb on - strandat 2261.514 kb on + strandat 2261.514 kb on + strandat 2261.534 kb on + strandat 2261.563 kb on - strandat 2261.669 kb on + strandat 2262.028 kb on + strand, within CA264_09740at 2262.031 kb on + strand, within CA264_09740at 2262.031 kb on + strand, within CA264_09740at 2262.152 kb on + strandat 2262.152 kb on + strandat 2262.198 kb on + strandat 2262.250 kb on - strandat 2262.339 kb on + strandat 2262.340 kb on - strandat 2262.489 kb on + strand, within CA264_09745at 2262.553 kb on - strand, within CA264_09745at 2262.553 kb on - strand, within CA264_09745at 2262.583 kb on + strand, within CA264_09745at 2262.676 kb on + strand, within CA264_09745at 2262.677 kb on - strand, within CA264_09745at 2262.786 kb on + strand, within CA264_09745at 2262.787 kb on - strand, within CA264_09745at 2262.834 kb on - strand, within CA264_09745at 2262.852 kb on + strand, within CA264_09745at 2262.854 kb on + strand, within CA264_09745at 2262.854 kb on + strand, within CA264_09745at 2262.854 kb on + strand, within CA264_09745at 2262.859 kb on - strand, within CA264_09745at 2262.980 kb on + strand, within CA264_09745at 2262.980 kb on + strand, within CA264_09745at 2262.980 kb on + strand, within CA264_09745at 2262.981 kb on - strand, within CA264_09745at 2262.981 kb on - strand, within CA264_09745at 2262.983 kb on + strand, within CA264_09745at 2263.052 kb on - strand, within CA264_09745

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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2,260,945 - CA264_09735 0.82 -0.2
2,260,961 - CA264_09735 0.86 -1.5
2,261,201 + +1.5
2,261,336 + -0.3
2,261,336 + +0.6
2,261,436 + -0.3
2,261,502 - +0.2
2,261,514 + -0.1
2,261,514 + -0.5
2,261,534 + -1.6
2,261,563 - -0.3
2,261,669 + +0.8
2,262,028 + CA264_09740 0.86 +0.5
2,262,031 + CA264_09740 0.87 +0.1
2,262,031 + CA264_09740 0.87 +1.8
2,262,152 + -0.1
2,262,152 + -1.0
2,262,198 + +0.1
2,262,250 - -0.2
2,262,339 + +0.2
2,262,340 - +0.8
2,262,489 + CA264_09745 0.17 -0.2
2,262,553 - CA264_09745 0.23 -0.8
2,262,553 - CA264_09745 0.23 +0.0
2,262,583 + CA264_09745 0.26 +0.2
2,262,676 + CA264_09745 0.35 -1.1
2,262,677 - CA264_09745 0.35 -1.2
2,262,786 + CA264_09745 0.46 +0.7
2,262,787 - CA264_09745 0.46 +2.0
2,262,834 - CA264_09745 0.50 +0.3
2,262,852 + CA264_09745 0.52 +0.3
2,262,854 + CA264_09745 0.52 -1.0
2,262,854 + CA264_09745 0.52 -0.2
2,262,854 + CA264_09745 0.52 +0.5
2,262,859 - CA264_09745 0.53 -0.8
2,262,980 + CA264_09745 0.64 +0.3
2,262,980 + CA264_09745 0.64 -0.2
2,262,980 + CA264_09745 0.64 +0.8
2,262,981 - CA264_09745 0.64 -0.6
2,262,981 - CA264_09745 0.64 +0.6
2,262,983 + CA264_09745 0.64 -0.7
2,263,052 - CA264_09745 0.71 -1.1

Or see this region's nucleotide sequence