Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08660 and CA264_08665 are separated by 515 nucleotides CA264_08665 and CA264_08670 are separated by 481 nucleotides
CA264_08660: CA264_08660 - sodium:proton antiporter, at 2,008,506 to 2,009,846
_08660
CA264_08665: CA264_08665 - N-acetylmuramoyl-L-alanine amidase, at 2,010,362 to 2,011,282
_08665
CA264_08670: CA264_08670 - hypothetical protein, at 2,011,764 to 2,013,023
_08670
Position (kb)
2010
2011
2012 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2009.611 kb on + strand, within CA264_08660 at 2009.761 kb on - strand at 2009.786 kb on + strand at 2009.848 kb on + strand at 2009.849 kb on - strand at 2009.850 kb on + strand at 2009.850 kb on + strand at 2009.850 kb on + strand at 2009.850 kb on + strand at 2009.851 kb on - strand at 2009.851 kb on - strand at 2009.922 kb on - strand at 2009.922 kb on - strand at 2009.927 kb on + strand at 2009.927 kb on + strand at 2009.985 kb on + strand at 2010.000 kb on + strand at 2010.069 kb on - strand at 2010.185 kb on - strand at 2010.255 kb on + strand at 2010.330 kb on - strand at 2010.361 kb on + strand at 2010.362 kb on - strand at 2010.368 kb on + strand at 2010.368 kb on + strand at 2010.368 kb on + strand at 2010.369 kb on - strand at 2010.371 kb on - strand at 2010.674 kb on + strand, within CA264_08665 at 2010.675 kb on - strand, within CA264_08665 at 2010.701 kb on + strand, within CA264_08665 at 2010.855 kb on + strand, within CA264_08665 at 2011.078 kb on + strand, within CA264_08665 at 2011.256 kb on + strand at 2011.274 kb on + strand at 2011.274 kb on + strand at 2011.301 kb on - strand at 2011.358 kb on + strand at 2011.367 kb on - strand at 2011.547 kb on + strand at 2011.548 kb on - strand at 2011.561 kb on - strand at 2011.600 kb on + strand at 2011.603 kb on - strand at 2011.603 kb on - strand at 2011.671 kb on + strand at 2011.676 kb on + strand at 2011.676 kb on + strand at 2011.722 kb on - strand at 2011.750 kb on + strand at 2011.751 kb on - strand at 2011.751 kb on - strand at 2011.751 kb on - strand at 2011.751 kb on - strand at 2011.755 kb on + strand at 2011.755 kb on + strand at 2011.755 kb on + strand at 2011.756 kb on - strand at 2011.756 kb on - strand at 2011.757 kb on + strand at 2011.758 kb on - strand at 2011.782 kb on + strand at 2011.782 kb on + strand at 2011.782 kb on + strand at 2011.783 kb on - strand at 2011.783 kb on - strand at 2011.783 kb on - strand at 2011.783 kb on - strand at 2011.783 kb on - strand at 2011.783 kb on - strand at 2011.787 kb on - strand at 2011.819 kb on + strand at 2011.819 kb on + strand at 2011.820 kb on - strand at 2011.820 kb on - strand at 2011.948 kb on + strand, within CA264_08670 at 2012.128 kb on + strand, within CA264_08670 at 2012.217 kb on - strand, within CA264_08670 at 2012.217 kb on - strand, within CA264_08670 at 2012.221 kb on + strand, within CA264_08670
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 2,009,611 + CA264_08660 0.82 -0.2 2,009,761 - +0.1 2,009,786 + -0.5 2,009,848 + -0.3 2,009,849 - -3.1 2,009,850 + -0.2 2,009,850 + +0.2 2,009,850 + -0.2 2,009,850 + -0.2 2,009,851 - +0.6 2,009,851 - -0.7 2,009,922 - -0.6 2,009,922 - +0.7 2,009,927 + -1.1 2,009,927 + -0.1 2,009,985 + +1.1 2,010,000 + -0.2 2,010,069 - +1.8 2,010,185 - +0.3 2,010,255 + -0.3 2,010,330 - +1.1 2,010,361 + -0.2 2,010,362 - -0.4 2,010,368 + +0.8 2,010,368 + +0.6 2,010,368 + +0.3 2,010,369 - -1.0 2,010,371 - +1.8 2,010,674 + CA264_08665 0.34 +0.9 2,010,675 - CA264_08665 0.34 -0.2 2,010,701 + CA264_08665 0.37 -0.2 2,010,855 + CA264_08665 0.54 -0.8 2,011,078 + CA264_08665 0.78 -0.2 2,011,256 + -0.8 2,011,274 + -0.2 2,011,274 + +0.4 2,011,301 - -0.8 2,011,358 + +0.0 2,011,367 - -1.5 2,011,547 + +0.8 2,011,548 - -1.7 2,011,561 - -0.6 2,011,600 + -0.4 2,011,603 - -0.9 2,011,603 - -1.0 2,011,671 + +0.8 2,011,676 + +0.4 2,011,676 + -0.8 2,011,722 - +0.1 2,011,750 + -0.2 2,011,751 - +0.3 2,011,751 - -0.8 2,011,751 - -0.2 2,011,751 - +0.4 2,011,755 + +0.5 2,011,755 + -0.3 2,011,755 + -2.0 2,011,756 - -0.5 2,011,756 - -0.8 2,011,757 + -1.5 2,011,758 - +0.6 2,011,782 + -1.5 2,011,782 + -0.4 2,011,782 + +1.2 2,011,783 - +0.4 2,011,783 - -0.8 2,011,783 - -0.1 2,011,783 - -0.0 2,011,783 - +0.1 2,011,783 - +1.8 2,011,787 - +1.8 2,011,819 + +0.4 2,011,819 + -0.1 2,011,820 - +0.7 2,011,820 - +0.8 2,011,948 + CA264_08670 0.15 -0.5 2,012,128 + CA264_08670 0.29 +0.4 2,012,217 - CA264_08670 0.36 -0.6 2,012,217 - CA264_08670 0.36 +0.5 2,012,221 + CA264_08670 0.36 -0.4
Or see this region's nucleotide sequence