Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05005

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04995 and CA264_05000 are separated by 107 nucleotidesCA264_05000 and CA264_05005 are separated by 15 nucleotidesCA264_05005 and CA264_05010 are separated by 69 nucleotidesCA264_05010 and CA264_05015 overlap by 2 nucleotides CA264_04995: CA264_04995 - hypothetical protein, at 1,160,003 to 1,160,593 _04995 CA264_05000: CA264_05000 - ribulose-phosphate 3-epimerase, at 1,160,701 to 1,161,354 _05000 CA264_05005: CA264_05005 - colicin receptor, at 1,161,370 to 1,163,796 _05005 CA264_05010: CA264_05010 - hypothetical protein, at 1,163,866 to 1,164,732 _05010 CA264_05015: CA264_05015 - hypothetical protein, at 1,164,731 to 1,164,955 _05015 Position (kb) 1161 1162 1163 1164Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1160.390 kb on + strand, within CA264_04995at 1160.391 kb on - strand, within CA264_04995at 1160.391 kb on - strand, within CA264_04995at 1160.436 kb on + strand, within CA264_04995at 1160.437 kb on - strand, within CA264_04995at 1160.499 kb on + strand, within CA264_04995at 1160.565 kb on - strandat 1160.591 kb on + strandat 1160.591 kb on + strandat 1160.635 kb on + strandat 1160.635 kb on + strandat 1160.697 kb on - strandat 1160.697 kb on - strandat 1161.352 kb on + strandat 1161.384 kb on - strandat 1161.402 kb on - strandat 1161.414 kb on - strandat 1161.550 kb on - strandat 1161.598 kb on + strandat 1161.601 kb on - strandat 1161.601 kb on - strandat 1161.646 kb on - strand, within CA264_05005at 1161.646 kb on - strand, within CA264_05005at 1161.659 kb on + strand, within CA264_05005at 1161.660 kb on - strand, within CA264_05005at 1161.804 kb on - strand, within CA264_05005at 1161.804 kb on - strand, within CA264_05005at 1161.826 kb on - strand, within CA264_05005at 1161.834 kb on + strand, within CA264_05005at 1162.055 kb on - strand, within CA264_05005at 1162.184 kb on - strand, within CA264_05005at 1162.184 kb on - strand, within CA264_05005at 1162.218 kb on + strand, within CA264_05005at 1162.219 kb on - strand, within CA264_05005at 1162.246 kb on + strand, within CA264_05005at 1162.246 kb on + strand, within CA264_05005at 1162.246 kb on + strand, within CA264_05005at 1162.247 kb on - strand, within CA264_05005at 1162.247 kb on - strand, within CA264_05005at 1162.247 kb on - strand, within CA264_05005at 1162.469 kb on - strand, within CA264_05005at 1162.469 kb on - strand, within CA264_05005at 1162.469 kb on - strand, within CA264_05005at 1162.470 kb on + strand, within CA264_05005at 1162.484 kb on + strand, within CA264_05005at 1162.484 kb on + strand, within CA264_05005at 1162.485 kb on - strand, within CA264_05005at 1162.527 kb on - strand, within CA264_05005at 1162.615 kb on - strand, within CA264_05005at 1162.665 kb on + strand, within CA264_05005at 1162.789 kb on + strand, within CA264_05005at 1162.790 kb on - strand, within CA264_05005at 1162.790 kb on - strand, within CA264_05005at 1162.790 kb on - strand, within CA264_05005at 1162.792 kb on + strand, within CA264_05005at 1162.792 kb on + strand, within CA264_05005at 1162.793 kb on - strand, within CA264_05005at 1162.883 kb on - strand, within CA264_05005at 1162.910 kb on - strand, within CA264_05005at 1162.940 kb on + strand, within CA264_05005at 1162.940 kb on + strand, within CA264_05005at 1162.946 kb on - strand, within CA264_05005at 1162.946 kb on - strand, within CA264_05005at 1162.954 kb on - strand, within CA264_05005at 1163.005 kb on + strand, within CA264_05005at 1163.052 kb on + strand, within CA264_05005at 1163.065 kb on - strand, within CA264_05005at 1163.104 kb on + strand, within CA264_05005at 1163.153 kb on - strand, within CA264_05005at 1163.155 kb on + strand, within CA264_05005at 1163.155 kb on + strand, within CA264_05005at 1163.156 kb on - strand, within CA264_05005at 1163.209 kb on + strand, within CA264_05005at 1163.212 kb on + strand, within CA264_05005at 1163.213 kb on - strand, within CA264_05005at 1163.213 kb on - strand, within CA264_05005at 1163.236 kb on + strand, within CA264_05005at 1163.236 kb on + strand, within CA264_05005at 1163.236 kb on + strand, within CA264_05005at 1163.236 kb on + strand, within CA264_05005at 1163.237 kb on - strand, within CA264_05005at 1163.237 kb on - strand, within CA264_05005at 1163.395 kb on + strand, within CA264_05005at 1163.479 kb on + strand, within CA264_05005at 1163.480 kb on - strand, within CA264_05005at 1163.480 kb on - strand, within CA264_05005at 1163.490 kb on - strand, within CA264_05005at 1163.490 kb on - strand, within CA264_05005at 1163.490 kb on - strand, within CA264_05005at 1163.495 kb on - strand, within CA264_05005at 1163.563 kb on + strandat 1163.563 kb on + strandat 1163.563 kb on + strandat 1163.564 kb on - strandat 1163.565 kb on + strandat 1163.596 kb on - strandat 1163.703 kb on + strandat 1163.703 kb on + strandat 1163.704 kb on - strandat 1163.704 kb on - strandat 1163.704 kb on - strandat 1163.707 kb on + strandat 1163.707 kb on + strandat 1163.707 kb on + strandat 1163.707 kb on + strandat 1163.707 kb on + strandat 1163.708 kb on - strandat 1163.731 kb on - strandat 1163.735 kb on - strandat 1163.735 kb on - strandat 1163.859 kb on - strandat 1163.916 kb on - strandat 1163.922 kb on + strandat 1163.922 kb on + strandat 1163.987 kb on + strand, within CA264_05010at 1163.988 kb on - strand, within CA264_05010at 1163.999 kb on + strand, within CA264_05010at 1163.999 kb on + strand, within CA264_05010at 1164.000 kb on - strand, within CA264_05010at 1164.032 kb on + strand, within CA264_05010at 1164.061 kb on - strand, within CA264_05010at 1164.063 kb on + strand, within CA264_05010at 1164.110 kb on + strand, within CA264_05010at 1164.110 kb on + strand, within CA264_05010at 1164.111 kb on - strand, within CA264_05010at 1164.134 kb on + strand, within CA264_05010at 1164.135 kb on - strand, within CA264_05010at 1164.135 kb on - strand, within CA264_05010at 1164.166 kb on + strand, within CA264_05010at 1164.167 kb on - strand, within CA264_05010at 1164.167 kb on - strand, within CA264_05010at 1164.356 kb on + strand, within CA264_05010at 1164.430 kb on - strand, within CA264_05010at 1164.440 kb on + strand, within CA264_05010at 1164.441 kb on - strand, within CA264_05010at 1164.476 kb on - strand, within CA264_05010at 1164.476 kb on - strand, within CA264_05010at 1164.476 kb on - strand, within CA264_05010at 1164.587 kb on + strand, within CA264_05010at 1164.597 kb on + strand, within CA264_05010at 1164.764 kb on - strandat 1164.764 kb on - strand, within CA264_05015at 1164.764 kb on - strand, within CA264_05015at 1164.764 kb on - strand, within CA264_05015at 1164.771 kb on + strand, within CA264_05015at 1164.771 kb on + strand, within CA264_05015at 1164.772 kb on - strand, within CA264_05015

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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1,160,390 + CA264_04995 0.65 +0.3
1,160,391 - CA264_04995 0.66 -0.3
1,160,391 - CA264_04995 0.66 +1.9
1,160,436 + CA264_04995 0.73 +0.6
1,160,437 - CA264_04995 0.73 -0.7
1,160,499 + CA264_04995 0.84 -1.4
1,160,565 - +0.4
1,160,591 + -0.0
1,160,591 + +0.4
1,160,635 + -0.4
1,160,635 + -0.6
1,160,697 - -0.2
1,160,697 - -0.3
1,161,352 + +0.9
1,161,384 - -0.1
1,161,402 - +0.3
1,161,414 - -0.1
1,161,550 - +1.9
1,161,598 + -0.7
1,161,601 - -1.4
1,161,601 - -2.3
1,161,646 - CA264_05005 0.11 -0.1
1,161,646 - CA264_05005 0.11 +0.6
1,161,659 + CA264_05005 0.12 +0.1
1,161,660 - CA264_05005 0.12 -1.0
1,161,804 - CA264_05005 0.18 -0.0
1,161,804 - CA264_05005 0.18 -1.0
1,161,826 - CA264_05005 0.19 -0.5
1,161,834 + CA264_05005 0.19 -1.1
1,162,055 - CA264_05005 0.28 +0.2
1,162,184 - CA264_05005 0.34 -0.9
1,162,184 - CA264_05005 0.34 -1.3
1,162,218 + CA264_05005 0.35 -1.2
1,162,219 - CA264_05005 0.35 -1.5
1,162,246 + CA264_05005 0.36 +0.4
1,162,246 + CA264_05005 0.36 +0.4
1,162,246 + CA264_05005 0.36 -0.4
1,162,247 - CA264_05005 0.36 -0.4
1,162,247 - CA264_05005 0.36 +0.6
1,162,247 - CA264_05005 0.36 +0.9
1,162,469 - CA264_05005 0.45 -1.0
1,162,469 - CA264_05005 0.45 +1.3
1,162,469 - CA264_05005 0.45 -0.7
1,162,470 + CA264_05005 0.45 +0.7
1,162,484 + CA264_05005 0.46 -0.1
1,162,484 + CA264_05005 0.46 -0.6
1,162,485 - CA264_05005 0.46 -0.1
1,162,527 - CA264_05005 0.48 -2.1
1,162,615 - CA264_05005 0.51 -0.3
1,162,665 + CA264_05005 0.53 -1.0
1,162,789 + CA264_05005 0.58 -0.3
1,162,790 - CA264_05005 0.59 +0.6
1,162,790 - CA264_05005 0.59 -0.9
1,162,790 - CA264_05005 0.59 -0.2
1,162,792 + CA264_05005 0.59 -0.1
1,162,792 + CA264_05005 0.59 -0.6
1,162,793 - CA264_05005 0.59 -0.8
1,162,883 - CA264_05005 0.62 -0.1
1,162,910 - CA264_05005 0.63 +0.3
1,162,940 + CA264_05005 0.65 +0.1
1,162,940 + CA264_05005 0.65 -0.9
1,162,946 - CA264_05005 0.65 -0.7
1,162,946 - CA264_05005 0.65 -0.7
1,162,954 - CA264_05005 0.65 +0.3
1,163,005 + CA264_05005 0.67 +0.1
1,163,052 + CA264_05005 0.69 -1.3
1,163,065 - CA264_05005 0.70 -0.6
1,163,104 + CA264_05005 0.71 +0.1
1,163,153 - CA264_05005 0.73 +1.3
1,163,155 + CA264_05005 0.74 +1.3
1,163,155 + CA264_05005 0.74 -0.7
1,163,156 - CA264_05005 0.74 -1.1
1,163,209 + CA264_05005 0.76 -0.1
1,163,212 + CA264_05005 0.76 -0.8
1,163,213 - CA264_05005 0.76 -2.4
1,163,213 - CA264_05005 0.76 -1.6
1,163,236 + CA264_05005 0.77 -1.4
1,163,236 + CA264_05005 0.77 -3.1
1,163,236 + CA264_05005 0.77 -0.1
1,163,236 + CA264_05005 0.77 -1.9
1,163,237 - CA264_05005 0.77 -0.5
1,163,237 - CA264_05005 0.77 -0.1
1,163,395 + CA264_05005 0.83 -1.6
1,163,479 + CA264_05005 0.87 -0.2
1,163,480 - CA264_05005 0.87 +0.1
1,163,480 - CA264_05005 0.87 -0.7
1,163,490 - CA264_05005 0.87 +1.3
1,163,490 - CA264_05005 0.87 -1.6
1,163,490 - CA264_05005 0.87 -2.3
1,163,495 - CA264_05005 0.88 +0.6
1,163,563 + -1.1
1,163,563 + -0.2
1,163,563 + -0.4
1,163,564 - +0.9
1,163,565 + -0.9
1,163,596 - -0.3
1,163,703 + +0.9
1,163,703 + +0.0
1,163,704 - -1.7
1,163,704 - -0.8
1,163,704 - +0.4
1,163,707 + -1.4
1,163,707 + -0.9
1,163,707 + -0.6
1,163,707 + -1.0
1,163,707 + +0.9
1,163,708 - -0.7
1,163,731 - -0.7
1,163,735 - +0.5
1,163,735 - +0.4
1,163,859 - +0.0
1,163,916 - -0.3
1,163,922 + +0.6
1,163,922 + +0.9
1,163,987 + CA264_05010 0.14 +0.2
1,163,988 - CA264_05010 0.14 -1.1
1,163,999 + CA264_05010 0.15 -0.2
1,163,999 + CA264_05010 0.15 -0.7
1,164,000 - CA264_05010 0.15 -0.5
1,164,032 + CA264_05010 0.19 -0.1
1,164,061 - CA264_05010 0.22 -0.0
1,164,063 + CA264_05010 0.23 +0.3
1,164,110 + CA264_05010 0.28 -0.2
1,164,110 + CA264_05010 0.28 -0.6
1,164,111 - CA264_05010 0.28 +0.2
1,164,134 + CA264_05010 0.31 +0.1
1,164,135 - CA264_05010 0.31 +0.1
1,164,135 - CA264_05010 0.31 -0.1
1,164,166 + CA264_05010 0.35 +1.5
1,164,167 - CA264_05010 0.35 +1.0
1,164,167 - CA264_05010 0.35 -0.1
1,164,356 + CA264_05010 0.57 +0.0
1,164,430 - CA264_05010 0.65 +0.0
1,164,440 + CA264_05010 0.66 +0.5
1,164,441 - CA264_05010 0.66 +0.5
1,164,476 - CA264_05010 0.70 +0.4
1,164,476 - CA264_05010 0.70 -0.9
1,164,476 - CA264_05010 0.70 +1.9
1,164,587 + CA264_05010 0.83 +0.5
1,164,597 + CA264_05010 0.84 -0.4
1,164,764 - +2.5
1,164,764 - CA264_05015 0.15 -0.4
1,164,764 - CA264_05015 0.15 -0.0
1,164,764 - CA264_05015 0.15 +0.2
1,164,771 + CA264_05015 0.18 -0.2
1,164,771 + CA264_05015 0.18 -0.4
1,164,772 - CA264_05015 0.18 -0.4

Or see this region's nucleotide sequence