Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04095 and CA264_04100 are separated by 140 nucleotides CA264_04100 and CA264_04105 are separated by 313 nucleotides CA264_04105 and CA264_04110 are separated by 301 nucleotides
CA264_04095: CA264_04095 - GAF domain-containing protein, at 949,954 to 950,445
_04095
CA264_04100: CA264_04100 - twin-arginine translocase TatA/TatE family subunit, at 950,586 to 950,798
_04100
CA264_04105: CA264_04105 - hypothetical protein, at 951,112 to 951,660
_04105
CA264_04110: CA264_04110 - hypothetical protein, at 951,962 to 953,728
_04110
Position (kb) 951
952 Strain fitness (log2 ratio) -2
-1
0
1
2 at 950.183 kb on + strand, within CA264_04095 at 950.183 kb on + strand, within CA264_04095 at 950.351 kb on - strand, within CA264_04095 at 950.390 kb on + strand, within CA264_04095 at 950.391 kb on - strand, within CA264_04095 at 950.537 kb on + strand at 950.565 kb on + strand at 950.588 kb on - strand at 950.638 kb on - strand, within CA264_04100 at 950.680 kb on - strand, within CA264_04100 at 950.733 kb on + strand, within CA264_04100 at 950.733 kb on + strand, within CA264_04100 at 950.738 kb on + strand, within CA264_04100 at 950.781 kb on + strand at 950.782 kb on - strand at 950.809 kb on - strand at 950.842 kb on + strand at 950.846 kb on - strand at 950.846 kb on - strand at 950.847 kb on + strand at 950.881 kb on + strand at 950.997 kb on + strand at 950.998 kb on - strand at 951.057 kb on + strand at 951.061 kb on + strand at 951.062 kb on - strand at 951.062 kb on - strand at 951.113 kb on + strand at 951.189 kb on - strand, within CA264_04105 at 951.226 kb on - strand, within CA264_04105 at 951.226 kb on - strand, within CA264_04105 at 951.226 kb on - strand, within CA264_04105 at 951.226 kb on - strand, within CA264_04105 at 951.311 kb on - strand, within CA264_04105 at 951.311 kb on - strand, within CA264_04105 at 951.405 kb on - strand, within CA264_04105 at 951.447 kb on + strand, within CA264_04105 at 951.479 kb on + strand, within CA264_04105 at 951.533 kb on - strand, within CA264_04105 at 951.540 kb on + strand, within CA264_04105 at 951.540 kb on + strand, within CA264_04105 at 951.541 kb on - strand, within CA264_04105 at 951.541 kb on - strand, within CA264_04105 at 951.570 kb on - strand, within CA264_04105 at 951.619 kb on - strand at 951.619 kb on - strand at 951.630 kb on - strand at 951.660 kb on + strand at 951.660 kb on + strand at 951.675 kb on + strand at 951.746 kb on - strand at 951.769 kb on + strand at 951.774 kb on - strand at 951.775 kb on + strand at 951.789 kb on + strand at 951.790 kb on - strand at 951.809 kb on - strand at 951.826 kb on - strand at 951.826 kb on - strand at 951.850 kb on - strand at 951.923 kb on - strand at 951.934 kb on + strand at 951.956 kb on - strand at 951.959 kb on + strand at 951.959 kb on + strand at 951.959 kb on + strand at 951.959 kb on + strand at 951.959 kb on + strand at 951.959 kb on + strand at 951.960 kb on - strand at 951.960 kb on - strand at 951.960 kb on - strand at 951.997 kb on + strand at 952.030 kb on + strand at 952.030 kb on + strand at 952.031 kb on - strand at 952.106 kb on + strand at 952.107 kb on - strand at 952.110 kb on + strand at 952.110 kb on + strand at 952.127 kb on + strand at 952.127 kb on + strand at 952.149 kb on - strand, within CA264_04110 at 952.149 kb on - strand, within CA264_04110 at 952.220 kb on + strand, within CA264_04110 at 952.220 kb on + strand, within CA264_04110 at 952.221 kb on - strand, within CA264_04110 at 952.360 kb on + strand, within CA264_04110 at 952.459 kb on + strand, within CA264_04110 at 952.460 kb on - strand, within CA264_04110 at 952.591 kb on + strand, within CA264_04110
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 950,183 + CA264_04095 0.47 +1.2 950,183 + CA264_04095 0.47 -0.2 950,351 - CA264_04095 0.81 -1.1 950,390 + CA264_04095 0.89 +0.3 950,391 - CA264_04095 0.89 +0.9 950,537 + +2.5 950,565 + +0.3 950,588 - +0.4 950,638 - CA264_04100 0.24 -2.4 950,680 - CA264_04100 0.44 -0.1 950,733 + CA264_04100 0.69 -0.2 950,733 + CA264_04100 0.69 -0.1 950,738 + CA264_04100 0.71 +0.0 950,781 + -1.0 950,782 - -0.1 950,809 - -0.3 950,842 + -1.4 950,846 - +0.1 950,846 - -0.0 950,847 + -0.1 950,881 + -0.4 950,997 + +0.0 950,998 - +0.0 951,057 + -0.2 951,061 + -2.1 951,062 - -1.3 951,062 - -0.7 951,113 + -0.3 951,189 - CA264_04105 0.14 -0.4 951,226 - CA264_04105 0.21 -0.7 951,226 - CA264_04105 0.21 -1.7 951,226 - CA264_04105 0.21 -2.4 951,226 - CA264_04105 0.21 +0.1 951,311 - CA264_04105 0.36 +1.2 951,311 - CA264_04105 0.36 +0.2 951,405 - CA264_04105 0.53 -0.4 951,447 + CA264_04105 0.61 -0.6 951,479 + CA264_04105 0.67 +0.3 951,533 - CA264_04105 0.77 -0.7 951,540 + CA264_04105 0.78 -0.7 951,540 + CA264_04105 0.78 -0.8 951,541 - CA264_04105 0.78 -1.5 951,541 - CA264_04105 0.78 -1.4 951,570 - CA264_04105 0.83 +0.5 951,619 - -1.3 951,619 - -0.3 951,630 - -1.4 951,660 + -0.3 951,660 + +0.6 951,675 + -1.7 951,746 - -0.5 951,769 + +0.5 951,774 - +0.3 951,775 + +0.4 951,789 + -0.3 951,790 - -0.1 951,809 - -0.5 951,826 - -0.0 951,826 - +1.0 951,850 - +0.1 951,923 - -0.1 951,934 + +0.4 951,956 - +0.1 951,959 + +0.1 951,959 + -2.4 951,959 + +0.3 951,959 + -0.2 951,959 + +0.1 951,959 + -0.1 951,960 - -1.7 951,960 - +0.1 951,960 - -0.2 951,997 + -2.1 952,030 + -0.1 952,030 + -0.1 952,031 - +0.5 952,106 + -0.1 952,107 - -0.3 952,110 + +0.2 952,110 + +0.4 952,127 + +0.0 952,127 + +0.9 952,149 - CA264_04110 0.11 -0.2 952,149 - CA264_04110 0.11 +1.3 952,220 + CA264_04110 0.15 -0.2 952,220 + CA264_04110 0.15 -0.9 952,221 - CA264_04110 0.15 -0.1 952,360 + CA264_04110 0.23 -0.4 952,459 + CA264_04110 0.28 -1.9 952,460 - CA264_04110 0.28 +0.6 952,591 + CA264_04110 0.36 +0.2
Or see this region's nucleotide sequence