Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04065 and CA264_04070 are separated by 94 nucleotides CA264_04070 and CA264_04075 are separated by 352 nucleotides CA264_04075 and CA264_04080 are separated by 37 nucleotides
CA264_04065: CA264_04065 - 23S ribosomal RNA, at 941,008 to 943,893
_04065
CA264_04070: CA264_04070 - 5S ribosomal RNA, at 943,988 to 944,099
_04070
CA264_04075: CA264_04075 - hypothetical protein, at 944,452 to 944,952
_04075
CA264_04080: CA264_04080 - PAS domain-containing sensor histidine kinase, at 944,990 to 947,020
_04080
Position (kb) 944
945 Strain fitness (log2 ratio) -1
0
1
2 at 944.336 kb on + strand at 944.376 kb on - strand at 944.392 kb on - strand at 944.399 kb on - strand at 944.413 kb on - strand at 944.444 kb on + strand at 944.445 kb on - strand at 944.445 kb on - strand at 944.445 kb on - strand at 944.451 kb on + strand at 944.451 kb on + strand at 944.451 kb on + strand at 944.452 kb on - strand at 944.452 kb on - strand at 944.576 kb on - strand, within CA264_04075 at 944.578 kb on - strand, within CA264_04075 at 944.599 kb on + strand, within CA264_04075 at 944.600 kb on - strand, within CA264_04075 at 944.633 kb on + strand, within CA264_04075 at 944.633 kb on + strand, within CA264_04075 at 944.633 kb on + strand, within CA264_04075 at 944.717 kb on + strand, within CA264_04075 at 944.718 kb on - strand, within CA264_04075 at 944.718 kb on - strand, within CA264_04075 at 944.732 kb on + strand, within CA264_04075 at 944.784 kb on + strand, within CA264_04075 at 944.863 kb on - strand, within CA264_04075 at 944.893 kb on + strand, within CA264_04075 at 944.958 kb on + strand at 944.959 kb on - strand at 945.004 kb on - strand at 945.029 kb on + strand at 945.029 kb on + strand at 945.081 kb on - strand at 945.087 kb on + strand at 945.088 kb on - strand at 945.088 kb on - strand at 945.088 kb on - strand at 945.088 kb on - strand at 945.095 kb on + strand at 945.096 kb on - strand at 945.151 kb on + strand at 945.151 kb on + strand at 945.182 kb on - strand at 945.182 kb on - strand at 945.182 kb on - strand at 945.232 kb on + strand, within CA264_04080 at 945.265 kb on + strand, within CA264_04080 at 945.266 kb on - strand, within CA264_04080 at 945.274 kb on + strand, within CA264_04080 at 945.288 kb on + strand, within CA264_04080 at 945.289 kb on - strand, within CA264_04080 at 945.290 kb on + strand, within CA264_04080 at 945.291 kb on - strand, within CA264_04080 at 945.302 kb on + strand, within CA264_04080 at 945.302 kb on + strand, within CA264_04080 at 945.302 kb on + strand, within CA264_04080 at 945.302 kb on + strand, within CA264_04080 at 945.302 kb on + strand, within CA264_04080 at 945.303 kb on - strand, within CA264_04080 at 945.328 kb on + strand, within CA264_04080 at 945.431 kb on + strand, within CA264_04080 at 945.515 kb on + strand, within CA264_04080 at 945.515 kb on + strand, within CA264_04080 at 945.606 kb on + strand, within CA264_04080 at 945.606 kb on + strand, within CA264_04080 at 945.606 kb on + strand, within CA264_04080 at 945.607 kb on - strand, within CA264_04080 at 945.607 kb on - strand, within CA264_04080 at 945.610 kb on + strand, within CA264_04080 at 945.610 kb on + strand, within CA264_04080 at 945.610 kb on + strand, within CA264_04080 at 945.745 kb on + strand, within CA264_04080 at 945.746 kb on - strand, within CA264_04080 at 945.758 kb on - strand, within CA264_04080 at 945.786 kb on + strand, within CA264_04080 at 945.787 kb on - strand, within CA264_04080 at 945.787 kb on - strand, within CA264_04080 at 945.787 kb on - strand, within CA264_04080 at 945.802 kb on - strand, within CA264_04080 at 945.891 kb on - strand, within CA264_04080 at 945.891 kb on - strand, within CA264_04080 at 945.924 kb on - strand, within CA264_04080 at 945.947 kb on + strand, within CA264_04080 at 945.950 kb on + strand, within CA264_04080 at 945.950 kb on + strand, within CA264_04080 at 945.950 kb on + strand, within CA264_04080
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 944,336 + +0.3 944,376 - -0.0 944,392 - -0.4 944,399 - +0.4 944,413 - -0.1 944,444 + -0.4 944,445 - -0.0 944,445 - +0.9 944,445 - +0.3 944,451 + +0.6 944,451 + -0.3 944,451 + +0.6 944,452 - -0.4 944,452 - +0.0 944,576 - CA264_04075 0.25 +0.9 944,578 - CA264_04075 0.25 -0.1 944,599 + CA264_04075 0.29 +1.5 944,600 - CA264_04075 0.30 +2.0 944,633 + CA264_04075 0.36 +0.8 944,633 + CA264_04075 0.36 -0.1 944,633 + CA264_04075 0.36 -0.1 944,717 + CA264_04075 0.53 -1.3 944,718 - CA264_04075 0.53 -0.3 944,718 - CA264_04075 0.53 +0.0 944,732 + CA264_04075 0.56 +0.9 944,784 + CA264_04075 0.66 +0.4 944,863 - CA264_04075 0.82 +0.8 944,893 + CA264_04075 0.88 -0.9 944,958 + -0.7 944,959 - +0.0 945,004 - +0.6 945,029 + +0.2 945,029 + -0.6 945,081 - +0.1 945,087 + +0.3 945,088 - +0.1 945,088 - +0.3 945,088 - -1.2 945,088 - +0.3 945,095 + +0.9 945,096 - -0.4 945,151 + +0.9 945,151 + -1.1 945,182 - -0.3 945,182 - -0.5 945,182 - -0.3 945,232 + CA264_04080 0.12 -0.2 945,265 + CA264_04080 0.14 +0.9 945,266 - CA264_04080 0.14 -0.4 945,274 + CA264_04080 0.14 -0.3 945,288 + CA264_04080 0.15 +0.5 945,289 - CA264_04080 0.15 +0.9 945,290 + CA264_04080 0.15 +0.7 945,291 - CA264_04080 0.15 -0.9 945,302 + CA264_04080 0.15 -0.2 945,302 + CA264_04080 0.15 +0.9 945,302 + CA264_04080 0.15 -0.7 945,302 + CA264_04080 0.15 -0.7 945,302 + CA264_04080 0.15 +0.7 945,303 - CA264_04080 0.15 +0.8 945,328 + CA264_04080 0.17 -0.1 945,431 + CA264_04080 0.22 +0.4 945,515 + CA264_04080 0.26 -0.3 945,515 + CA264_04080 0.26 -0.6 945,606 + CA264_04080 0.30 -0.0 945,606 + CA264_04080 0.30 +0.4 945,606 + CA264_04080 0.30 -0.8 945,607 - CA264_04080 0.30 +0.1 945,607 - CA264_04080 0.30 -0.1 945,610 + CA264_04080 0.31 -0.5 945,610 + CA264_04080 0.31 -0.4 945,610 + CA264_04080 0.31 -0.2 945,745 + CA264_04080 0.37 +0.5 945,746 - CA264_04080 0.37 +0.9 945,758 - CA264_04080 0.38 +0.2 945,786 + CA264_04080 0.39 -1.3 945,787 - CA264_04080 0.39 +0.5 945,787 - CA264_04080 0.39 -0.2 945,787 - CA264_04080 0.39 -0.5 945,802 - CA264_04080 0.40 +2.5 945,891 - CA264_04080 0.44 -0.8 945,891 - CA264_04080 0.44 +0.2 945,924 - CA264_04080 0.46 -0.7 945,947 + CA264_04080 0.47 -0.7 945,950 + CA264_04080 0.47 -0.7 945,950 + CA264_04080 0.47 -0.1 945,950 + CA264_04080 0.47 +0.5
Or see this region's nucleotide sequence