Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03555 and CA264_03560 are separated by 370 nucleotides CA264_03560 and CA264_03565 are separated by 271 nucleotides CA264_03565 and CA264_03570 are separated by 506 nucleotides
CA264_03555: CA264_03555 - hypothetical protein, at 828,491 to 828,916
_03555
CA264_03560: CA264_03560 - hypothetical protein, at 829,287 to 829,616
_03560
CA264_03565: CA264_03565 - transposase, at 829,888 to 830,433
_03565
CA264_03570: CA264_03570 - hypothetical protein, at 830,940 to 831,854
_03570
Position (kb) 829
830
831 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 828.945 kb on - strand at 828.951 kb on + strand at 829.028 kb on - strand at 829.047 kb on + strand at 829.055 kb on + strand at 829.055 kb on + strand at 829.119 kb on + strand at 829.119 kb on + strand at 829.120 kb on - strand at 829.120 kb on - strand at 829.123 kb on - strand at 829.123 kb on - strand at 829.123 kb on - strand at 829.146 kb on + strand at 829.164 kb on + strand at 829.164 kb on + strand at 829.164 kb on + strand at 829.165 kb on - strand at 829.191 kb on + strand at 829.192 kb on - strand at 829.225 kb on + strand at 829.266 kb on - strand at 829.267 kb on + strand at 829.268 kb on - strand at 829.268 kb on - strand at 829.274 kb on - strand at 829.286 kb on - strand at 829.305 kb on + strand at 829.312 kb on + strand at 829.402 kb on + strand, within CA264_03560 at 829.409 kb on + strand, within CA264_03560 at 829.445 kb on - strand, within CA264_03560 at 829.445 kb on - strand, within CA264_03560 at 829.483 kb on + strand, within CA264_03560 at 829.483 kb on + strand, within CA264_03560 at 829.484 kb on - strand, within CA264_03560 at 829.516 kb on + strand, within CA264_03560 at 829.517 kb on - strand, within CA264_03560 at 829.580 kb on - strand, within CA264_03560 at 829.580 kb on - strand, within CA264_03560 at 829.580 kb on - strand, within CA264_03560 at 829.580 kb on - strand, within CA264_03560 at 829.580 kb on - strand, within CA264_03560 at 829.595 kb on - strand at 829.603 kb on + strand at 829.604 kb on - strand at 829.615 kb on - strand at 829.750 kb on + strand at 829.750 kb on + strand at 829.754 kb on + strand at 829.754 kb on + strand at 829.755 kb on - strand at 829.769 kb on + strand at 829.775 kb on + strand at 829.811 kb on - strand at 829.829 kb on + strand at 829.830 kb on - strand at 829.830 kb on - strand at 829.830 kb on - strand at 829.835 kb on - strand at 829.835 kb on - strand at 829.871 kb on + strand at 829.884 kb on + strand at 829.885 kb on - strand at 829.885 kb on - strand at 829.885 kb on - strand at 829.885 kb on - strand at 829.926 kb on + strand at 829.926 kb on + strand at 829.947 kb on - strand, within CA264_03565 at 830.046 kb on + strand, within CA264_03565 at 830.047 kb on - strand, within CA264_03565 at 830.047 kb on - strand, within CA264_03565 at 830.187 kb on + strand, within CA264_03565 at 830.190 kb on - strand, within CA264_03565 at 830.190 kb on - strand, within CA264_03565 at 830.279 kb on + strand, within CA264_03565 at 830.279 kb on + strand, within CA264_03565 at 830.280 kb on - strand, within CA264_03565 at 830.280 kb on - strand, within CA264_03565 at 830.280 kb on - strand, within CA264_03565 at 830.309 kb on + strand, within CA264_03565 at 830.326 kb on - strand, within CA264_03565 at 830.326 kb on - strand, within CA264_03565 at 830.329 kb on + strand, within CA264_03565 at 830.369 kb on + strand, within CA264_03565 at 830.393 kb on + strand at 830.393 kb on + strand at 830.394 kb on - strand at 830.421 kb on - strand at 830.436 kb on - strand at 830.436 kb on - strand at 830.444 kb on - strand at 830.444 kb on - strand at 830.448 kb on + strand at 830.448 kb on + strand at 830.448 kb on + strand at 830.448 kb on + strand at 830.448 kb on + strand at 830.448 kb on + strand at 830.449 kb on - strand at 830.450 kb on + strand at 830.451 kb on - strand at 830.452 kb on + strand at 830.453 kb on - strand at 830.453 kb on - strand at 830.496 kb on - strand at 830.505 kb on - strand at 830.505 kb on - strand at 830.505 kb on - strand at 830.521 kb on - strand at 830.541 kb on - strand at 830.562 kb on - strand at 830.653 kb on - strand at 830.718 kb on - strand at 830.718 kb on - strand at 830.718 kb on - strand at 830.725 kb on - strand at 830.824 kb on + strand at 830.827 kb on + strand at 830.828 kb on - strand at 830.862 kb on + strand at 830.880 kb on - strand at 830.891 kb on - strand at 830.891 kb on - strand at 830.893 kb on + strand at 830.902 kb on - strand at 830.907 kb on + strand at 830.907 kb on + strand at 830.908 kb on - strand at 830.911 kb on + strand at 830.912 kb on - strand at 830.918 kb on + strand at 830.918 kb on + strand at 830.919 kb on - strand at 830.919 kb on - strand at 830.919 kb on - strand at 830.923 kb on + strand at 830.925 kb on + strand at 830.925 kb on + strand at 830.926 kb on - strand at 830.926 kb on - strand at 830.948 kb on + strand at 831.026 kb on + strand at 831.028 kb on + strand at 831.028 kb on + strand at 831.029 kb on - strand at 831.049 kb on + strand, within CA264_03570 at 831.071 kb on + strand, within CA264_03570 at 831.111 kb on + strand, within CA264_03570 at 831.140 kb on - strand, within CA264_03570 at 831.140 kb on - strand, within CA264_03570 at 831.168 kb on - strand at 831.194 kb on - strand, within CA264_03570 at 831.194 kb on - strand, within CA264_03570 at 831.194 kb on - strand, within CA264_03570 at 831.197 kb on - strand, within CA264_03570 at 831.223 kb on - strand, within CA264_03570 at 831.236 kb on - strand, within CA264_03570 at 831.239 kb on + strand, within CA264_03570 at 831.265 kb on + strand, within CA264_03570 at 831.266 kb on - strand, within CA264_03570 at 831.359 kb on - strand, within CA264_03570 at 831.433 kb on + strand, within CA264_03570 at 831.433 kb on + strand, within CA264_03570
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 828,945 - -0.7 828,951 + -0.3 829,028 - +1.9 829,047 + -0.9 829,055 + -0.8 829,055 + +2.9 829,119 + -0.5 829,119 + +0.1 829,120 - -0.8 829,120 - -1.1 829,123 - -1.0 829,123 - -0.1 829,123 - +0.6 829,146 + -0.3 829,164 + -0.0 829,164 + +1.9 829,164 + -0.4 829,165 - -1.1 829,191 + -0.1 829,192 - +0.2 829,225 + -0.8 829,266 - -0.5 829,267 + -1.9 829,268 - -0.2 829,268 - -0.6 829,274 - -0.6 829,286 - -0.1 829,305 + +0.1 829,312 + -1.2 829,402 + CA264_03560 0.35 -1.1 829,409 + CA264_03560 0.37 -0.4 829,445 - CA264_03560 0.48 +0.2 829,445 - CA264_03560 0.48 -0.4 829,483 + CA264_03560 0.59 -0.1 829,483 + CA264_03560 0.59 +1.1 829,484 - CA264_03560 0.60 +0.9 829,516 + CA264_03560 0.69 -0.5 829,517 - CA264_03560 0.70 +1.5 829,580 - CA264_03560 0.89 -0.2 829,580 - CA264_03560 0.89 +0.4 829,580 - CA264_03560 0.89 +0.3 829,580 - CA264_03560 0.89 +0.0 829,580 - CA264_03560 0.89 -0.8 829,595 - -1.0 829,603 + -0.6 829,604 - -1.9 829,615 - +0.1 829,750 + -0.0 829,750 + -0.4 829,754 + -1.1 829,754 + +0.3 829,755 - -0.1 829,769 + +0.2 829,775 + +0.1 829,811 - -1.1 829,829 + -0.4 829,830 - -1.0 829,830 - -0.3 829,830 - +0.5 829,835 - -0.3 829,835 - -0.7 829,871 + +0.3 829,884 + +0.3 829,885 - -1.4 829,885 - -0.4 829,885 - -1.4 829,885 - -1.3 829,926 + +0.2 829,926 + -1.1 829,947 - CA264_03565 0.11 +2.1 830,046 + CA264_03565 0.29 -0.2 830,047 - CA264_03565 0.29 -0.4 830,047 - CA264_03565 0.29 +0.6 830,187 + CA264_03565 0.55 +0.4 830,190 - CA264_03565 0.55 -0.0 830,190 - CA264_03565 0.55 +0.9 830,279 + CA264_03565 0.72 +0.6 830,279 + CA264_03565 0.72 -0.4 830,280 - CA264_03565 0.72 +0.7 830,280 - CA264_03565 0.72 +0.3 830,280 - CA264_03565 0.72 +0.2 830,309 + CA264_03565 0.77 +0.4 830,326 - CA264_03565 0.80 +1.2 830,326 - CA264_03565 0.80 -0.3 830,329 + CA264_03565 0.81 -0.1 830,369 + CA264_03565 0.88 +0.3 830,393 + -2.0 830,393 + +0.6 830,394 - -0.1 830,421 - -1.6 830,436 - -1.6 830,436 - -0.4 830,444 - +0.9 830,444 - -0.1 830,448 + -1.4 830,448 + +1.7 830,448 + -1.0 830,448 + +0.9 830,448 + -0.2 830,448 + +2.9 830,449 - +0.4 830,450 + -0.7 830,451 - +0.2 830,452 + -1.1 830,453 - -0.6 830,453 - +0.1 830,496 - -1.1 830,505 - -0.5 830,505 - -1.0 830,505 - -0.7 830,521 - +1.9 830,541 - -0.4 830,562 - -0.0 830,653 - +0.1 830,718 - +0.3 830,718 - +0.6 830,718 - +0.5 830,725 - +0.1 830,824 + +0.5 830,827 + +0.5 830,828 - -0.5 830,862 + -0.8 830,880 - -0.7 830,891 - +0.7 830,891 - +0.4 830,893 + +0.9 830,902 - -0.1 830,907 + -0.4 830,907 + -0.5 830,908 - -0.9 830,911 + -0.1 830,912 - +0.3 830,918 + +0.7 830,918 + +1.0 830,919 - -0.0 830,919 - -0.7 830,919 - +0.9 830,923 + +0.6 830,925 + -0.8 830,925 + -1.1 830,926 - +0.4 830,926 - +0.6 830,948 + -0.5 831,026 + +1.2 831,028 + +0.6 831,028 + -1.0 831,029 - +0.5 831,049 + CA264_03570 0.12 +1.9 831,071 + CA264_03570 0.14 -0.1 831,111 + CA264_03570 0.19 -0.0 831,140 - CA264_03570 0.22 -0.7 831,140 - CA264_03570 0.22 -0.5 831,168 - +0.9 831,194 - CA264_03570 0.28 -0.8 831,194 - CA264_03570 0.28 -1.7 831,194 - CA264_03570 0.28 -0.7 831,197 - CA264_03570 0.28 -0.1 831,223 - CA264_03570 0.31 -1.7 831,236 - CA264_03570 0.32 +0.4 831,239 + CA264_03570 0.33 -0.3 831,265 + CA264_03570 0.36 -1.5 831,266 - CA264_03570 0.36 -1.4 831,359 - CA264_03570 0.46 +1.2 831,433 + CA264_03570 0.54 +0.5 831,433 + CA264_03570 0.54 +0.3
Or see this region's nucleotide sequence