Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03355

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03345 and CA264_03350 overlap by 14 nucleotidesCA264_03350 and CA264_03355 are separated by 98 nucleotidesCA264_03355 and CA264_03360 are separated by 131 nucleotides CA264_03345: CA264_03345 - hypothetical protein, at 783,197 to 784,594 _03345 CA264_03350: CA264_03350 - RNA polymerase subunit sigma-24, at 784,581 to 785,180 _03350 CA264_03355: CA264_03355 - VWA domain-containing protein, at 785,279 to 787,144 _03355 CA264_03360: CA264_03360 - hypothetical protein, at 787,276 to 788,832 _03360 Position (kb) 785 786 787 788Strain fitness (log2 ratio) -2 -1 0 1 2at 784.305 kb on - strand, within CA264_03345at 784.305 kb on - strand, within CA264_03345at 784.365 kb on - strand, within CA264_03345at 784.377 kb on - strand, within CA264_03345at 784.377 kb on - strand, within CA264_03345at 784.571 kb on + strandat 784.571 kb on + strandat 784.572 kb on - strandat 784.583 kb on - strandat 784.642 kb on + strand, within CA264_03350at 784.692 kb on - strand, within CA264_03350at 784.693 kb on + strand, within CA264_03350at 784.730 kb on + strand, within CA264_03350at 784.732 kb on + strand, within CA264_03350at 784.732 kb on + strand, within CA264_03350at 784.732 kb on + strand, within CA264_03350at 784.732 kb on + strand, within CA264_03350at 784.945 kb on - strand, within CA264_03350at 785.044 kb on + strand, within CA264_03350at 785.188 kb on - strandat 785.190 kb on - strandat 785.190 kb on - strandat 785.236 kb on - strandat 785.255 kb on + strandat 785.255 kb on + strandat 785.256 kb on - strandat 785.451 kb on - strandat 785.459 kb on + strandat 785.460 kb on - strandat 785.529 kb on + strand, within CA264_03355at 785.529 kb on + strand, within CA264_03355at 785.530 kb on - strand, within CA264_03355at 785.530 kb on - strand, within CA264_03355at 785.559 kb on + strand, within CA264_03355at 785.559 kb on + strand, within CA264_03355at 785.559 kb on + strand, within CA264_03355at 785.560 kb on - strand, within CA264_03355at 785.627 kb on - strand, within CA264_03355at 785.627 kb on - strand, within CA264_03355at 785.679 kb on - strand, within CA264_03355at 785.691 kb on - strand, within CA264_03355at 785.732 kb on + strand, within CA264_03355at 785.733 kb on - strand, within CA264_03355at 785.739 kb on - strand, within CA264_03355at 785.767 kb on + strand, within CA264_03355at 785.863 kb on - strand, within CA264_03355at 785.894 kb on + strand, within CA264_03355at 785.894 kb on + strand, within CA264_03355at 785.895 kb on - strand, within CA264_03355at 785.899 kb on + strand, within CA264_03355at 785.899 kb on + strand, within CA264_03355at 785.903 kb on + strand, within CA264_03355at 785.903 kb on + strand, within CA264_03355at 785.903 kb on + strand, within CA264_03355at 785.904 kb on - strand, within CA264_03355at 785.904 kb on - strand, within CA264_03355at 785.904 kb on - strand, within CA264_03355at 785.904 kb on - strand, within CA264_03355at 785.946 kb on - strand, within CA264_03355at 786.170 kb on + strand, within CA264_03355at 786.170 kb on + strand, within CA264_03355at 786.228 kb on + strand, within CA264_03355at 786.284 kb on - strand, within CA264_03355at 786.284 kb on - strand, within CA264_03355at 786.285 kb on + strand, within CA264_03355at 786.286 kb on - strand, within CA264_03355at 786.286 kb on - strand, within CA264_03355at 786.286 kb on - strand, within CA264_03355at 786.319 kb on + strand, within CA264_03355at 786.319 kb on + strand, within CA264_03355at 786.320 kb on - strand, within CA264_03355at 786.432 kb on + strand, within CA264_03355at 786.432 kb on + strand, within CA264_03355at 786.516 kb on - strand, within CA264_03355at 786.516 kb on - strand, within CA264_03355at 786.516 kb on - strand, within CA264_03355at 786.521 kb on + strand, within CA264_03355at 786.522 kb on - strand, within CA264_03355at 786.522 kb on - strand, within CA264_03355at 786.529 kb on + strand, within CA264_03355at 786.529 kb on + strand, within CA264_03355at 786.583 kb on + strand, within CA264_03355at 786.634 kb on - strand, within CA264_03355at 786.689 kb on - strand, within CA264_03355at 786.730 kb on + strand, within CA264_03355at 786.730 kb on + strand, within CA264_03355at 786.872 kb on + strand, within CA264_03355at 786.873 kb on - strand, within CA264_03355at 786.892 kb on + strand, within CA264_03355at 787.015 kb on + strandat 787.031 kb on + strandat 787.210 kb on + strandat 787.229 kb on - strandat 787.235 kb on + strandat 787.235 kb on + strandat 787.235 kb on + strandat 787.235 kb on + strandat 787.388 kb on - strandat 787.449 kb on - strand, within CA264_03360at 787.459 kb on + strand, within CA264_03360at 787.460 kb on - strand, within CA264_03360at 787.509 kb on + strand, within CA264_03360at 787.510 kb on - strand, within CA264_03360at 787.547 kb on - strand, within CA264_03360at 787.547 kb on - strand, within CA264_03360at 787.641 kb on - strand, within CA264_03360at 787.641 kb on - strand, within CA264_03360at 787.641 kb on - strand, within CA264_03360at 787.641 kb on - strand, within CA264_03360at 787.674 kb on + strand, within CA264_03360at 787.690 kb on + strand, within CA264_03360at 787.692 kb on + strand, within CA264_03360at 787.745 kb on - strand, within CA264_03360at 787.784 kb on + strand, within CA264_03360at 787.784 kb on + strand, within CA264_03360at 787.784 kb on + strand, within CA264_03360at 787.785 kb on - strand, within CA264_03360at 787.785 kb on - strand, within CA264_03360at 787.785 kb on - strand, within CA264_03360at 787.785 kb on - strand, within CA264_03360at 787.785 kb on - strand, within CA264_03360at 787.973 kb on - strand, within CA264_03360at 787.992 kb on - strand, within CA264_03360at 788.103 kb on + strand, within CA264_03360at 788.103 kb on + strand, within CA264_03360at 788.103 kb on + strand, within CA264_03360at 788.104 kb on - strand, within CA264_03360at 788.106 kb on - strand, within CA264_03360at 788.113 kb on + strand, within CA264_03360at 788.113 kb on + strand, within CA264_03360at 788.113 kb on + strand, within CA264_03360at 788.114 kb on - strand, within CA264_03360at 788.114 kb on - strand, within CA264_03360at 788.114 kb on - strand, within CA264_03360

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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784,305 - CA264_03345 0.79 +0.3
784,305 - CA264_03345 0.79 +0.0
784,365 - CA264_03345 0.84 -1.1
784,377 - CA264_03345 0.84 +0.9
784,377 - CA264_03345 0.84 -0.2
784,571 + -0.9
784,571 + -0.0
784,572 - -0.8
784,583 - -1.1
784,642 + CA264_03350 0.10 +0.3
784,692 - CA264_03350 0.18 -0.2
784,693 + CA264_03350 0.19 +0.2
784,730 + CA264_03350 0.25 +0.1
784,732 + CA264_03350 0.25 -1.7
784,732 + CA264_03350 0.25 +0.1
784,732 + CA264_03350 0.25 +0.3
784,732 + CA264_03350 0.25 -0.8
784,945 - CA264_03350 0.61 -0.3
785,044 + CA264_03350 0.77 -0.2
785,188 - -0.4
785,190 - -1.0
785,190 - +0.3
785,236 - -1.1
785,255 + -1.0
785,255 + +0.7
785,256 - -1.1
785,451 - +1.0
785,459 + -0.7
785,460 - -0.7
785,529 + CA264_03355 0.13 +0.4
785,529 + CA264_03355 0.13 +1.3
785,530 - CA264_03355 0.13 +0.9
785,530 - CA264_03355 0.13 -0.3
785,559 + CA264_03355 0.15 -1.2
785,559 + CA264_03355 0.15 -0.6
785,559 + CA264_03355 0.15 +0.2
785,560 - CA264_03355 0.15 +0.4
785,627 - CA264_03355 0.19 +0.4
785,627 - CA264_03355 0.19 +0.6
785,679 - CA264_03355 0.21 -0.2
785,691 - CA264_03355 0.22 -0.6
785,732 + CA264_03355 0.24 -0.4
785,733 - CA264_03355 0.24 -0.7
785,739 - CA264_03355 0.25 -1.6
785,767 + CA264_03355 0.26 -0.8
785,863 - CA264_03355 0.31 -1.4
785,894 + CA264_03355 0.33 -2.1
785,894 + CA264_03355 0.33 +0.9
785,895 - CA264_03355 0.33 +0.1
785,899 + CA264_03355 0.33 -1.4
785,899 + CA264_03355 0.33 -0.3
785,903 + CA264_03355 0.33 -1.1
785,903 + CA264_03355 0.33 +0.3
785,903 + CA264_03355 0.33 -0.7
785,904 - CA264_03355 0.33 -0.1
785,904 - CA264_03355 0.33 +0.3
785,904 - CA264_03355 0.33 +1.6
785,904 - CA264_03355 0.33 +0.2
785,946 - CA264_03355 0.36 -0.2
786,170 + CA264_03355 0.48 +0.2
786,170 + CA264_03355 0.48 -0.6
786,228 + CA264_03355 0.51 -0.9
786,284 - CA264_03355 0.54 -0.5
786,284 - CA264_03355 0.54 -1.1
786,285 + CA264_03355 0.54 +0.1
786,286 - CA264_03355 0.54 -0.0
786,286 - CA264_03355 0.54 -0.6
786,286 - CA264_03355 0.54 -0.7
786,319 + CA264_03355 0.56 -0.7
786,319 + CA264_03355 0.56 -0.6
786,320 - CA264_03355 0.56 -0.5
786,432 + CA264_03355 0.62 -0.1
786,432 + CA264_03355 0.62 -0.2
786,516 - CA264_03355 0.66 +0.3
786,516 - CA264_03355 0.66 -0.4
786,516 - CA264_03355 0.66 +0.0
786,521 + CA264_03355 0.67 +0.6
786,522 - CA264_03355 0.67 -1.3
786,522 - CA264_03355 0.67 -1.0
786,529 + CA264_03355 0.67 +0.1
786,529 + CA264_03355 0.67 +0.6
786,583 + CA264_03355 0.70 +0.1
786,634 - CA264_03355 0.73 -1.3
786,689 - CA264_03355 0.76 -0.4
786,730 + CA264_03355 0.78 -0.5
786,730 + CA264_03355 0.78 +1.4
786,872 + CA264_03355 0.85 +0.6
786,873 - CA264_03355 0.85 -0.8
786,892 + CA264_03355 0.86 +0.3
787,015 + -0.1
787,031 + +0.1
787,210 + -0.4
787,229 - -0.4
787,235 + -0.8
787,235 + -0.5
787,235 + +0.0
787,235 + -0.4
787,388 - -0.3
787,449 - CA264_03360 0.11 -0.6
787,459 + CA264_03360 0.12 +0.4
787,460 - CA264_03360 0.12 +0.9
787,509 + CA264_03360 0.15 -0.5
787,510 - CA264_03360 0.15 -0.2
787,547 - CA264_03360 0.17 +0.9
787,547 - CA264_03360 0.17 -0.2
787,641 - CA264_03360 0.23 -0.0
787,641 - CA264_03360 0.23 -0.6
787,641 - CA264_03360 0.23 +0.2
787,641 - CA264_03360 0.23 +0.3
787,674 + CA264_03360 0.26 +0.4
787,690 + CA264_03360 0.27 -0.5
787,692 + CA264_03360 0.27 -0.4
787,745 - CA264_03360 0.30 -0.1
787,784 + CA264_03360 0.33 -0.1
787,784 + CA264_03360 0.33 -0.5
787,784 + CA264_03360 0.33 -0.3
787,785 - CA264_03360 0.33 -0.7
787,785 - CA264_03360 0.33 -0.2
787,785 - CA264_03360 0.33 +0.1
787,785 - CA264_03360 0.33 +0.2
787,785 - CA264_03360 0.33 +0.1
787,973 - CA264_03360 0.45 +1.9
787,992 - CA264_03360 0.46 -0.2
788,103 + CA264_03360 0.53 -0.2
788,103 + CA264_03360 0.53 +0.2
788,103 + CA264_03360 0.53 +0.6
788,104 - CA264_03360 0.53 +1.6
788,106 - CA264_03360 0.53 +0.9
788,113 + CA264_03360 0.54 -0.4
788,113 + CA264_03360 0.54 +0.0
788,113 + CA264_03360 0.54 +0.1
788,114 - CA264_03360 0.54 -0.8
788,114 - CA264_03360 0.54 -0.0
788,114 - CA264_03360 0.54 +0.5

Or see this region's nucleotide sequence