Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01530

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01525 and CA264_01530 are separated by 85 nucleotidesCA264_01530 and CA264_01535 are separated by 90 nucleotidesCA264_01535 and CA264_01540 are separated by 440 nucleotides CA264_01525: CA264_01525 - penicillin-binding protein, at 360,619 to 362,601 _01525 CA264_01530: CA264_01530 - hypothetical protein, at 362,687 to 363,730 _01530 CA264_01535: CA264_01535 - hypothetical protein, at 363,821 to 364,003 _01535 CA264_01540: CA264_01540 - hypothetical protein, at 364,444 to 364,767 _01540 Position (kb) 362 363 364Strain fitness (log2 ratio) -2 -1 0 1 2 3at 361.748 kb on + strand, within CA264_01525at 361.749 kb on - strand, within CA264_01525at 361.749 kb on - strand, within CA264_01525at 361.838 kb on + strand, within CA264_01525at 361.839 kb on - strand, within CA264_01525at 361.873 kb on + strand, within CA264_01525at 361.873 kb on + strand, within CA264_01525at 361.969 kb on - strand, within CA264_01525at 361.997 kb on - strand, within CA264_01525at 362.189 kb on + strand, within CA264_01525at 362.190 kb on - strand, within CA264_01525at 362.190 kb on - strand, within CA264_01525at 362.190 kb on - strand, within CA264_01525at 362.218 kb on + strand, within CA264_01525at 362.218 kb on + strand, within CA264_01525at 362.219 kb on - strand, within CA264_01525at 362.230 kb on - strand, within CA264_01525at 362.230 kb on - strand, within CA264_01525at 362.395 kb on + strand, within CA264_01525at 362.395 kb on + strand, within CA264_01525at 362.396 kb on - strand, within CA264_01525at 362.396 kb on - strand, within CA264_01525at 362.628 kb on + strandat 362.629 kb on - strandat 362.676 kb on + strandat 362.676 kb on + strandat 362.706 kb on + strandat 362.794 kb on + strand, within CA264_01530at 362.795 kb on - strand, within CA264_01530at 362.871 kb on - strand, within CA264_01530at 362.871 kb on - strand, within CA264_01530at 362.885 kb on - strand, within CA264_01530at 362.897 kb on + strand, within CA264_01530at 362.898 kb on - strand, within CA264_01530at 362.937 kb on + strand, within CA264_01530at 363.172 kb on + strand, within CA264_01530at 363.218 kb on - strand, within CA264_01530at 363.218 kb on - strand, within CA264_01530at 363.218 kb on - strand, within CA264_01530at 363.232 kb on + strand, within CA264_01530at 363.232 kb on + strand, within CA264_01530at 363.233 kb on - strand, within CA264_01530at 363.362 kb on - strand, within CA264_01530at 363.383 kb on - strand, within CA264_01530at 363.425 kb on + strand, within CA264_01530at 363.445 kb on + strand, within CA264_01530at 363.445 kb on + strand, within CA264_01530at 363.446 kb on - strand, within CA264_01530at 363.446 kb on - strand, within CA264_01530at 363.446 kb on - strand, within CA264_01530at 363.447 kb on + strand, within CA264_01530at 363.447 kb on + strand, within CA264_01530at 363.448 kb on - strand, within CA264_01530at 363.472 kb on - strand, within CA264_01530at 363.485 kb on + strand, within CA264_01530at 363.494 kb on - strand, within CA264_01530at 363.497 kb on + strand, within CA264_01530at 363.498 kb on - strand, within CA264_01530at 363.619 kb on + strand, within CA264_01530at 363.631 kb on - strandat 363.654 kb on - strandat 363.685 kb on + strandat 363.686 kb on - strandat 363.728 kb on + strandat 363.749 kb on - strandat 363.822 kb on + strandat 363.823 kb on - strandat 364.006 kb on + strandat 364.093 kb on - strandat 364.103 kb on + strandat 364.103 kb on + strandat 364.104 kb on - strandat 364.104 kb on - strandat 364.104 kb on - strandat 364.105 kb on + strandat 364.106 kb on - strandat 364.106 kb on - strandat 364.115 kb on - strandat 364.115 kb on - strandat 364.232 kb on + strandat 364.232 kb on + strandat 364.232 kb on + strandat 364.233 kb on - strandat 364.233 kb on - strandat 364.269 kb on - strandat 364.269 kb on - strandat 364.275 kb on + strandat 364.281 kb on + strandat 364.424 kb on - strandat 364.424 kb on - strandat 364.429 kb on + strandat 364.429 kb on + strandat 364.446 kb on - strandat 364.446 kb on - strandat 364.446 kb on - strandat 364.588 kb on - strand, within CA264_01540at 364.611 kb on - strand, within CA264_01540at 364.675 kb on - strand, within CA264_01540at 364.675 kb on - strand, within CA264_01540at 364.677 kb on - strand, within CA264_01540at 364.689 kb on + strand, within CA264_01540at 364.689 kb on + strand, within CA264_01540at 364.693 kb on + strand, within CA264_01540at 364.693 kb on + strand, within CA264_01540at 364.694 kb on - strand, within CA264_01540at 364.694 kb on - strand, within CA264_01540at 364.712 kb on + strand, within CA264_01540at 364.719 kb on + strand, within CA264_01540

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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361,748 + CA264_01525 0.57 +0.1
361,749 - CA264_01525 0.57 +0.0
361,749 - CA264_01525 0.57 -0.2
361,838 + CA264_01525 0.61 -0.8
361,839 - CA264_01525 0.62 -1.5
361,873 + CA264_01525 0.63 +0.1
361,873 + CA264_01525 0.63 -1.1
361,969 - CA264_01525 0.68 +0.1
361,997 - CA264_01525 0.69 +0.4
362,189 + CA264_01525 0.79 +0.2
362,190 - CA264_01525 0.79 -0.4
362,190 - CA264_01525 0.79 -0.2
362,190 - CA264_01525 0.79 -0.1
362,218 + CA264_01525 0.81 +2.8
362,218 + CA264_01525 0.81 -0.5
362,219 - CA264_01525 0.81 -1.0
362,230 - CA264_01525 0.81 -0.2
362,230 - CA264_01525 0.81 +1.2
362,395 + CA264_01525 0.90 +0.7
362,395 + CA264_01525 0.90 +0.5
362,396 - CA264_01525 0.90 -2.0
362,396 - CA264_01525 0.90 -0.7
362,628 + -0.8
362,629 - +0.1
362,676 + -0.4
362,676 + -0.2
362,706 + +1.2
362,794 + CA264_01530 0.10 -1.4
362,795 - CA264_01530 0.10 -0.1
362,871 - CA264_01530 0.18 -0.1
362,871 - CA264_01530 0.18 -0.1
362,885 - CA264_01530 0.19 -0.2
362,897 + CA264_01530 0.20 -0.7
362,898 - CA264_01530 0.20 -0.2
362,937 + CA264_01530 0.24 -0.6
363,172 + CA264_01530 0.46 -0.2
363,218 - CA264_01530 0.51 -0.6
363,218 - CA264_01530 0.51 -0.1
363,218 - CA264_01530 0.51 -0.7
363,232 + CA264_01530 0.52 -2.5
363,232 + CA264_01530 0.52 -0.1
363,233 - CA264_01530 0.52 -0.3
363,362 - CA264_01530 0.65 +0.5
363,383 - CA264_01530 0.67 -0.3
363,425 + CA264_01530 0.71 -0.3
363,445 + CA264_01530 0.73 -1.0
363,445 + CA264_01530 0.73 -0.0
363,446 - CA264_01530 0.73 +0.2
363,446 - CA264_01530 0.73 +0.6
363,446 - CA264_01530 0.73 +0.8
363,447 + CA264_01530 0.73 +0.4
363,447 + CA264_01530 0.73 -1.5
363,448 - CA264_01530 0.73 -1.2
363,472 - CA264_01530 0.75 -0.3
363,485 + CA264_01530 0.76 -2.2
363,494 - CA264_01530 0.77 -0.2
363,497 + CA264_01530 0.78 -0.6
363,498 - CA264_01530 0.78 +1.2
363,619 + CA264_01530 0.89 +1.8
363,631 - +0.8
363,654 - -0.2
363,685 + -0.0
363,686 - -0.5
363,728 + +1.0
363,749 - +0.3
363,822 + +0.3
363,823 - +0.5
364,006 + +0.8
364,093 - +0.1
364,103 + -0.1
364,103 + -0.1
364,104 - +0.2
364,104 - +0.1
364,104 - -0.1
364,105 + -0.6
364,106 - +0.5
364,106 - +0.2
364,115 - -1.0
364,115 - -0.8
364,232 + -0.8
364,232 + -0.8
364,232 + +1.1
364,233 - -2.0
364,233 - -0.3
364,269 - -0.0
364,269 - -0.4
364,275 + -0.8
364,281 + +0.8
364,424 - +0.4
364,424 - +1.1
364,429 + -0.2
364,429 + +0.3
364,446 - -0.9
364,446 - +1.3
364,446 - +0.6
364,588 - CA264_01540 0.44 -0.2
364,611 - CA264_01540 0.52 -0.1
364,675 - CA264_01540 0.71 +0.8
364,675 - CA264_01540 0.71 +0.2
364,677 - CA264_01540 0.72 -2.4
364,689 + CA264_01540 0.76 +0.8
364,689 + CA264_01540 0.76 -0.2
364,693 + CA264_01540 0.77 -1.4
364,693 + CA264_01540 0.77 -0.8
364,694 - CA264_01540 0.77 -0.6
364,694 - CA264_01540 0.77 +1.5
364,712 + CA264_01540 0.83 +2.0
364,719 + CA264_01540 0.85 -0.4

Or see this region's nucleotide sequence