Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01410 and CA264_01415 are separated by 88 nucleotides CA264_01415 and CA264_01420 are separated by 82 nucleotides CA264_01420 and CA264_01425 are separated by 248 nucleotides
CA264_01410: CA264_01410 - ATP-dependent Clp protease proteolytic subunit, at 336,471 to 337,172
_01410
CA264_01415: CA264_01415 - trigger factor, at 337,261 to 338,583
_01415
CA264_01420: CA264_01420 - tRNA-Leu, at 338,666 to 338,747
_01420
CA264_01425: CA264_01425 - RelA/SpoT family protein, at 338,996 to 341,188
_01425
Position (kb)
337
338
339 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 336.330 kb on + strand at 336.351 kb on + strand at 336.451 kb on - strand at 336.457 kb on + strand at 336.458 kb on - strand at 336.460 kb on + strand at 336.462 kb on + strand at 336.462 kb on + strand at 336.463 kb on - strand at 336.465 kb on + strand at 336.465 kb on + strand at 336.472 kb on + strand at 336.764 kb on + strand, within CA264_01410 at 336.764 kb on + strand, within CA264_01410 at 336.807 kb on + strand, within CA264_01410 at 337.096 kb on + strand, within CA264_01410 at 337.096 kb on + strand, within CA264_01410 at 337.186 kb on - strand at 337.238 kb on + strand at 337.238 kb on + strand at 337.243 kb on + strand at 337.245 kb on + strand at 337.245 kb on + strand at 337.245 kb on + strand at 337.246 kb on - strand at 337.249 kb on + strand at 337.250 kb on - strand at 337.250 kb on - strand at 337.364 kb on + strand at 337.415 kb on + strand, within CA264_01415 at 337.578 kb on - strand, within CA264_01415 at 337.659 kb on + strand, within CA264_01415 at 337.864 kb on + strand, within CA264_01415 at 337.921 kb on + strand, within CA264_01415 at 338.007 kb on + strand, within CA264_01415 at 338.008 kb on - strand, within CA264_01415 at 338.021 kb on - strand, within CA264_01415 at 338.091 kb on + strand, within CA264_01415 at 338.203 kb on + strand, within CA264_01415 at 338.204 kb on - strand, within CA264_01415 at 338.356 kb on - strand, within CA264_01415 at 338.356 kb on - strand, within CA264_01415 at 338.412 kb on - strand, within CA264_01415 at 338.438 kb on - strand, within CA264_01415 at 338.569 kb on + strand at 338.612 kb on + strand at 338.616 kb on + strand at 338.641 kb on + strand at 338.766 kb on - strand at 338.783 kb on - strand at 338.796 kb on - strand at 338.807 kb on - strand at 338.847 kb on - strand at 338.883 kb on - strand at 338.896 kb on + strand at 338.897 kb on - strand at 338.897 kb on - strand at 338.906 kb on + strand at 338.909 kb on - strand at 338.919 kb on + strand at 338.936 kb on - strand at 338.936 kb on - strand at 338.939 kb on + strand at 338.939 kb on + strand at 338.940 kb on - strand at 338.940 kb on - strand at 338.941 kb on + strand at 338.942 kb on - strand at 338.945 kb on + strand at 338.945 kb on + strand at 338.945 kb on + strand at 338.945 kb on + strand at 338.946 kb on - strand at 338.946 kb on - strand at 338.946 kb on - strand at 338.946 kb on - strand at 338.946 kb on - strand at 338.947 kb on + strand at 338.948 kb on - strand at 338.948 kb on - strand at 338.948 kb on - strand at 338.977 kb on + strand at 338.977 kb on + strand at 338.978 kb on - strand at 338.979 kb on + strand at 338.979 kb on + strand at 338.979 kb on + strand at 338.979 kb on + strand at 338.979 kb on + strand at 338.982 kb on + strand at 338.982 kb on + strand at 338.982 kb on + strand at 338.983 kb on - strand at 338.983 kb on - strand at 338.983 kb on - strand at 338.983 kb on - strand at 338.984 kb on + strand at 338.985 kb on - strand at 338.985 kb on - strand at 338.993 kb on - strand at 339.006 kb on + strand at 339.007 kb on - strand at 339.027 kb on + strand at 339.028 kb on - strand at 339.030 kb on + strand at 339.031 kb on - strand at 339.038 kb on + strand at 339.057 kb on - strand at 339.161 kb on + strand at 339.161 kb on + strand at 339.161 kb on + strand at 339.161 kb on + strand at 339.161 kb on + strand at 339.162 kb on - strand at 339.221 kb on - strand, within CA264_01425 at 339.321 kb on + strand, within CA264_01425 at 339.519 kb on - strand, within CA264_01425 at 339.519 kb on - strand, within CA264_01425 at 339.554 kb on + strand, within CA264_01425 at 339.554 kb on + strand, within CA264_01425 at 339.555 kb on - strand, within CA264_01425 at 339.555 kb on - strand, within CA264_01425
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 336,330 + +0.4 336,351 + -0.4 336,451 - +0.7 336,457 + -3.1 336,458 - -0.5 336,460 + -2.2 336,462 + -2.7 336,462 + -0.2 336,463 - -0.6 336,465 + -4.2 336,465 + -3.3 336,472 + -1.5 336,764 + CA264_01410 0.42 -1.2 336,764 + CA264_01410 0.42 -2.9 336,807 + CA264_01410 0.48 -2.0 337,096 + CA264_01410 0.89 -0.5 337,096 + CA264_01410 0.89 +0.8 337,186 - -2.0 337,238 + -0.3 337,238 + -0.1 337,243 + +0.1 337,245 + -0.3 337,245 + +0.0 337,245 + -0.2 337,246 - +1.3 337,249 + +0.2 337,250 - +0.6 337,250 - -1.1 337,364 + +0.1 337,415 + CA264_01415 0.12 +0.8 337,578 - CA264_01415 0.24 +0.5 337,659 + CA264_01415 0.30 -1.2 337,864 + CA264_01415 0.46 +0.8 337,921 + CA264_01415 0.50 -0.6 338,007 + CA264_01415 0.56 +0.2 338,008 - CA264_01415 0.56 +0.1 338,021 - CA264_01415 0.57 -1.4 338,091 + CA264_01415 0.63 +0.0 338,203 + CA264_01415 0.71 -1.1 338,204 - CA264_01415 0.71 +2.4 338,356 - CA264_01415 0.83 -0.2 338,356 - CA264_01415 0.83 -0.9 338,412 - CA264_01415 0.87 -0.5 338,438 - CA264_01415 0.89 -0.0 338,569 + +0.1 338,612 + +0.1 338,616 + -0.6 338,641 + -0.2 338,766 - -0.3 338,783 - -0.3 338,796 - -1.5 338,807 - -0.6 338,847 - +1.5 338,883 - +1.2 338,896 + +0.2 338,897 - +0.9 338,897 - -0.3 338,906 + -1.2 338,909 - +0.5 338,919 + +0.8 338,936 - +0.1 338,936 - -0.4 338,939 + -0.5 338,939 + +0.6 338,940 - +0.7 338,940 - -1.2 338,941 + +0.5 338,942 - +0.8 338,945 + +0.8 338,945 + -0.8 338,945 + +0.3 338,945 + +1.2 338,946 - +0.1 338,946 - -0.3 338,946 - +0.8 338,946 - +0.2 338,946 - +0.7 338,947 + +1.2 338,948 - +3.0 338,948 - +0.6 338,948 - +0.6 338,977 + -0.3 338,977 + +0.6 338,978 - -0.7 338,979 + +2.2 338,979 + +0.9 338,979 + -0.4 338,979 + -0.2 338,979 + +0.9 338,982 + +1.0 338,982 + -0.2 338,982 + -0.0 338,983 - -0.5 338,983 - +0.4 338,983 - -1.5 338,983 - -1.2 338,984 + -0.8 338,985 - -0.0 338,985 - +0.1 338,993 - +2.0 339,006 + +0.1 339,007 - -0.1 339,027 + -1.0 339,028 - +0.6 339,030 + -0.4 339,031 - +0.2 339,038 + -0.4 339,057 - -0.2 339,161 + -0.0 339,161 + +0.2 339,161 + -0.0 339,161 + +0.8 339,161 + +0.5 339,162 - -0.2 339,221 - CA264_01425 0.10 +0.2 339,321 + CA264_01425 0.15 +1.8 339,519 - CA264_01425 0.24 +0.2 339,519 - CA264_01425 0.24 -0.5 339,554 + CA264_01425 0.25 +0.6 339,554 + CA264_01425 0.25 +2.7 339,555 - CA264_01425 0.25 +0.2 339,555 - CA264_01425 0.25 +0.3
Or see this region's nucleotide sequence