Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01200

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01195 and CA264_01200 are separated by 296 nucleotidesCA264_01200 and CA264_01205 are separated by 58 nucleotidesCA264_01205 and CA264_01210 are separated by 310 nucleotides CA264_01195: CA264_01195 - hypothetical protein, at 275,168 to 276,115 _01195 CA264_01200: CA264_01200 - zinc carboxypeptidase, at 276,412 to 279,000 _01200 CA264_01205: CA264_01205 - hypothetical protein, at 279,059 to 279,289 _01205 CA264_01210: CA264_01210 - hypothetical protein, at 279,600 to 285,683 _01210 Position (kb) 276 277 278 279 280Strain fitness (log2 ratio) -2 -1 0 1 2 3at 275.427 kb on - strand, within CA264_01195at 275.450 kb on + strand, within CA264_01195at 275.451 kb on - strand, within CA264_01195at 275.473 kb on + strand, within CA264_01195at 275.474 kb on - strand, within CA264_01195at 275.505 kb on - strand, within CA264_01195at 275.678 kb on + strand, within CA264_01195at 275.678 kb on + strand, within CA264_01195at 275.678 kb on + strand, within CA264_01195at 275.679 kb on - strand, within CA264_01195at 275.679 kb on - strand, within CA264_01195at 275.679 kb on - strand, within CA264_01195at 275.699 kb on + strand, within CA264_01195at 275.700 kb on - strand, within CA264_01195at 275.804 kb on + strand, within CA264_01195at 275.817 kb on + strand, within CA264_01195at 275.858 kb on + strand, within CA264_01195at 275.858 kb on + strand, within CA264_01195at 275.906 kb on + strand, within CA264_01195at 275.907 kb on - strand, within CA264_01195at 276.028 kb on - strandat 276.033 kb on - strandat 276.092 kb on - strandat 276.114 kb on - strandat 276.114 kb on - strandat 276.142 kb on - strandat 276.163 kb on + strandat 276.215 kb on + strandat 276.286 kb on + strandat 276.311 kb on + strandat 276.311 kb on + strandat 276.312 kb on - strandat 276.312 kb on - strandat 276.315 kb on - strandat 276.315 kb on - strandat 276.315 kb on - strandat 276.315 kb on - strandat 276.315 kb on - strandat 276.321 kb on + strandat 276.322 kb on - strandat 276.322 kb on - strandat 276.413 kb on + strandat 276.501 kb on - strandat 276.617 kb on + strandat 276.628 kb on - strandat 276.644 kb on + strandat 276.644 kb on + strandat 276.662 kb on + strandat 276.684 kb on + strand, within CA264_01200at 276.728 kb on + strand, within CA264_01200at 276.774 kb on + strand, within CA264_01200at 276.784 kb on + strand, within CA264_01200at 276.787 kb on + strand, within CA264_01200at 276.864 kb on + strand, within CA264_01200at 276.916 kb on + strand, within CA264_01200at 276.975 kb on - strand, within CA264_01200at 277.003 kb on - strand, within CA264_01200at 277.004 kb on + strand, within CA264_01200at 277.005 kb on - strand, within CA264_01200at 277.027 kb on - strand, within CA264_01200at 277.183 kb on - strand, within CA264_01200at 277.214 kb on + strand, within CA264_01200at 277.215 kb on - strand, within CA264_01200at 277.215 kb on - strand, within CA264_01200at 277.216 kb on + strand, within CA264_01200at 277.217 kb on - strand, within CA264_01200at 277.314 kb on - strand, within CA264_01200at 277.410 kb on - strand, within CA264_01200at 277.440 kb on - strand, within CA264_01200at 277.586 kb on + strand, within CA264_01200at 277.670 kb on + strand, within CA264_01200at 277.688 kb on + strand, within CA264_01200at 277.694 kb on - strand, within CA264_01200at 277.707 kb on + strand, within CA264_01200at 277.735 kb on + strand, within CA264_01200at 277.805 kb on + strand, within CA264_01200at 277.813 kb on + strand, within CA264_01200at 277.814 kb on - strand, within CA264_01200at 277.814 kb on - strand, within CA264_01200at 277.814 kb on - strand, within CA264_01200at 278.039 kb on + strand, within CA264_01200at 278.040 kb on - strand, within CA264_01200at 278.040 kb on - strand, within CA264_01200at 278.127 kb on - strand, within CA264_01200at 278.151 kb on + strand, within CA264_01200at 278.152 kb on - strand, within CA264_01200at 278.249 kb on - strand, within CA264_01200at 278.339 kb on + strand, within CA264_01200at 278.346 kb on + strand, within CA264_01200at 278.365 kb on + strand, within CA264_01200at 278.365 kb on + strand, within CA264_01200at 278.366 kb on - strand, within CA264_01200at 278.461 kb on - strand, within CA264_01200at 278.461 kb on - strand, within CA264_01200at 278.463 kb on + strand, within CA264_01200at 278.464 kb on - strand, within CA264_01200at 278.506 kb on + strand, within CA264_01200at 278.506 kb on + strand, within CA264_01200at 278.538 kb on - strand, within CA264_01200at 278.539 kb on + strand, within CA264_01200at 278.662 kb on - strand, within CA264_01200at 278.757 kb on - strandat 278.757 kb on - strandat 278.804 kb on + strandat 278.805 kb on - strandat 278.854 kb on + strandat 278.871 kb on + strandat 278.872 kb on - strandat 278.889 kb on - strandat 278.909 kb on + strandat 278.910 kb on - strandat 278.910 kb on - strandat 278.910 kb on - strandat 279.004 kb on + strandat 279.041 kb on + strandat 279.041 kb on + strandat 279.079 kb on - strandat 279.086 kb on + strand, within CA264_01205at 279.087 kb on - strand, within CA264_01205at 279.087 kb on - strand, within CA264_01205at 279.087 kb on - strand, within CA264_01205at 279.105 kb on - strand, within CA264_01205at 279.149 kb on - strand, within CA264_01205at 279.152 kb on - strand, within CA264_01205at 279.152 kb on - strand, within CA264_01205at 279.164 kb on - strand, within CA264_01205at 279.164 kb on - strand, within CA264_01205at 279.188 kb on + strand, within CA264_01205at 279.233 kb on + strand, within CA264_01205at 279.248 kb on - strand, within CA264_01205at 279.438 kb on - strandat 279.570 kb on + strandat 279.571 kb on - strandat 279.591 kb on + strandat 279.600 kb on - strandat 279.624 kb on - strandat 279.624 kb on - strandat 279.791 kb on - strandat 279.791 kb on - strandat 279.806 kb on - strandat 279.806 kb on - strandat 279.823 kb on + strandat 279.824 kb on - strandat 279.839 kb on - strandat 279.839 kb on - strandat 279.839 kb on - strandat 279.839 kb on - strandat 279.845 kb on - strandat 279.896 kb on + strandat 279.899 kb on + strandat 279.900 kb on - strandat 279.900 kb on - strandat 279.902 kb on + strandat 279.921 kb on - strandat 279.943 kb on + strandat 279.949 kb on + strandat 279.949 kb on + strandat 279.949 kb on + strandat 279.955 kb on + strandat 279.956 kb on - strandat 280.000 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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275,427 - CA264_01195 0.27 -0.2
275,450 + CA264_01195 0.30 -1.0
275,451 - CA264_01195 0.30 +2.1
275,473 + CA264_01195 0.32 +0.9
275,474 - CA264_01195 0.32 -0.1
275,505 - CA264_01195 0.36 -0.5
275,678 + CA264_01195 0.54 -0.1
275,678 + CA264_01195 0.54 -0.8
275,678 + CA264_01195 0.54 +1.1
275,679 - CA264_01195 0.54 +1.0
275,679 - CA264_01195 0.54 +0.3
275,679 - CA264_01195 0.54 -1.2
275,699 + CA264_01195 0.56 -0.7
275,700 - CA264_01195 0.56 -0.6
275,804 + CA264_01195 0.67 -0.2
275,817 + CA264_01195 0.68 +1.1
275,858 + CA264_01195 0.73 -1.1
275,858 + CA264_01195 0.73 -1.8
275,906 + CA264_01195 0.78 +0.5
275,907 - CA264_01195 0.78 +0.4
276,028 - -0.8
276,033 - -0.6
276,092 - -0.5
276,114 - +0.8
276,114 - -1.2
276,142 - +0.2
276,163 + +2.8
276,215 + -0.2
276,286 + -0.3
276,311 + -0.3
276,311 + -0.1
276,312 - -1.1
276,312 - +0.8
276,315 - -0.2
276,315 - +0.1
276,315 - +0.3
276,315 - +1.4
276,315 - +0.0
276,321 + -0.6
276,322 - +1.2
276,322 - -0.4
276,413 + -0.7
276,501 - -1.3
276,617 + -0.7
276,628 - +2.4
276,644 + -0.2
276,644 + +0.6
276,662 + -0.2
276,684 + CA264_01200 0.11 -0.5
276,728 + CA264_01200 0.12 -0.1
276,774 + CA264_01200 0.14 +0.8
276,784 + CA264_01200 0.14 -0.2
276,787 + CA264_01200 0.14 -1.0
276,864 + CA264_01200 0.17 -0.3
276,916 + CA264_01200 0.19 +0.4
276,975 - CA264_01200 0.22 +1.8
277,003 - CA264_01200 0.23 +0.2
277,004 + CA264_01200 0.23 +0.2
277,005 - CA264_01200 0.23 +0.9
277,027 - CA264_01200 0.24 -0.4
277,183 - CA264_01200 0.30 -0.3
277,214 + CA264_01200 0.31 -1.4
277,215 - CA264_01200 0.31 +0.2
277,215 - CA264_01200 0.31 -0.7
277,216 + CA264_01200 0.31 +0.5
277,217 - CA264_01200 0.31 +0.6
277,314 - CA264_01200 0.35 -0.6
277,410 - CA264_01200 0.39 -0.6
277,440 - CA264_01200 0.40 -0.2
277,586 + CA264_01200 0.45 +1.8
277,670 + CA264_01200 0.49 +1.8
277,688 + CA264_01200 0.49 -0.5
277,694 - CA264_01200 0.50 +0.4
277,707 + CA264_01200 0.50 -0.8
277,735 + CA264_01200 0.51 +0.5
277,805 + CA264_01200 0.54 -1.2
277,813 + CA264_01200 0.54 +0.2
277,814 - CA264_01200 0.54 -0.4
277,814 - CA264_01200 0.54 +0.1
277,814 - CA264_01200 0.54 +0.8
278,039 + CA264_01200 0.63 -0.6
278,040 - CA264_01200 0.63 -0.0
278,040 - CA264_01200 0.63 -0.9
278,127 - CA264_01200 0.66 -0.3
278,151 + CA264_01200 0.67 -0.2
278,152 - CA264_01200 0.67 -0.3
278,249 - CA264_01200 0.71 -0.8
278,339 + CA264_01200 0.74 -0.2
278,346 + CA264_01200 0.75 -0.7
278,365 + CA264_01200 0.75 -0.8
278,365 + CA264_01200 0.75 -0.1
278,366 - CA264_01200 0.75 +1.1
278,461 - CA264_01200 0.79 -0.4
278,461 - CA264_01200 0.79 +0.1
278,463 + CA264_01200 0.79 -0.5
278,464 - CA264_01200 0.79 -0.1
278,506 + CA264_01200 0.81 -0.4
278,506 + CA264_01200 0.81 -0.9
278,538 - CA264_01200 0.82 +0.5
278,539 + CA264_01200 0.82 -0.8
278,662 - CA264_01200 0.87 -0.8
278,757 - -0.3
278,757 - +0.0
278,804 + -0.2
278,805 - +0.6
278,854 + -1.8
278,871 + +0.8
278,872 - -0.2
278,889 - -0.2
278,909 + -0.9
278,910 - -0.1
278,910 - +0.4
278,910 - -0.7
279,004 + -1.2
279,041 + -0.8
279,041 + +1.8
279,079 - -1.1
279,086 + CA264_01205 0.12 -0.2
279,087 - CA264_01205 0.12 -0.1
279,087 - CA264_01205 0.12 +0.2
279,087 - CA264_01205 0.12 -0.4
279,105 - CA264_01205 0.20 -0.9
279,149 - CA264_01205 0.39 -0.6
279,152 - CA264_01205 0.40 +0.4
279,152 - CA264_01205 0.40 -0.1
279,164 - CA264_01205 0.45 +0.1
279,164 - CA264_01205 0.45 +0.2
279,188 + CA264_01205 0.56 -0.6
279,233 + CA264_01205 0.75 -1.5
279,248 - CA264_01205 0.82 -0.8
279,438 - -0.3
279,570 + -1.8
279,571 - -1.4
279,591 + -1.5
279,600 - -0.6
279,624 - -0.5
279,624 - +0.1
279,791 - +0.1
279,791 - -0.2
279,806 - +0.2
279,806 - -0.4
279,823 + -0.7
279,824 - +2.4
279,839 - -0.2
279,839 - -0.8
279,839 - -0.0
279,839 - +0.5
279,845 - +0.4
279,896 + -0.1
279,899 + +0.8
279,900 - +0.5
279,900 - +1.5
279,902 + -0.2
279,921 - -0.3
279,943 + +0.8
279,949 + -0.3
279,949 + -0.2
279,949 + -0.0
279,955 + +0.4
279,956 - -0.2
280,000 + -0.2

Or see this region's nucleotide sequence