Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01170

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01165 and CA264_01170 are separated by 79 nucleotidesCA264_01170 and CA264_01175 are separated by 4 nucleotides CA264_01165: CA264_01165 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 257,125 to 258,336 _01165 CA264_01170: CA264_01170 - hypothetical protein, at 258,416 to 259,414 _01170 CA264_01175: CA264_01175 - hypothetical protein, at 259,419 to 262,607 _01175 Position (kb) 258 259 260Strain fitness (log2 ratio) -1 0 1 2at 257.581 kb on - strand, within CA264_01165at 257.584 kb on - strand, within CA264_01165at 257.585 kb on + strand, within CA264_01165at 257.585 kb on + strand, within CA264_01165at 257.750 kb on - strand, within CA264_01165at 257.783 kb on + strand, within CA264_01165at 257.944 kb on + strand, within CA264_01165at 257.945 kb on - strand, within CA264_01165at 257.969 kb on - strand, within CA264_01165at 257.997 kb on + strand, within CA264_01165at 257.997 kb on + strand, within CA264_01165at 258.208 kb on + strand, within CA264_01165at 258.211 kb on + strand, within CA264_01165at 258.297 kb on - strandat 258.375 kb on + strandat 258.375 kb on + strandat 258.394 kb on + strandat 258.395 kb on - strandat 258.441 kb on - strandat 258.477 kb on - strandat 258.477 kb on - strandat 258.477 kb on - strandat 258.497 kb on - strandat 258.535 kb on - strand, within CA264_01170at 258.561 kb on + strand, within CA264_01170at 258.562 kb on - strand, within CA264_01170at 258.562 kb on - strand, within CA264_01170at 258.600 kb on + strand, within CA264_01170at 258.751 kb on - strand, within CA264_01170at 258.834 kb on + strand, within CA264_01170at 258.835 kb on - strand, within CA264_01170at 258.835 kb on - strand, within CA264_01170at 258.849 kb on + strand, within CA264_01170at 258.849 kb on + strand, within CA264_01170at 258.887 kb on - strand, within CA264_01170at 258.949 kb on + strand, within CA264_01170at 258.950 kb on - strand, within CA264_01170at 258.977 kb on + strand, within CA264_01170at 258.978 kb on - strand, within CA264_01170at 259.027 kb on - strand, within CA264_01170at 259.277 kb on + strand, within CA264_01170at 259.277 kb on + strand, within CA264_01170at 259.277 kb on + strand, within CA264_01170at 259.278 kb on - strand, within CA264_01170at 259.328 kb on + strandat 259.329 kb on - strandat 259.332 kb on + strandat 259.332 kb on + strandat 259.332 kb on + strandat 259.333 kb on - strandat 259.333 kb on - strandat 259.379 kb on + strandat 259.380 kb on - strandat 259.403 kb on + strandat 259.403 kb on + strandat 259.403 kb on + strandat 259.404 kb on - strandat 259.473 kb on + strandat 259.474 kb on - strandat 259.480 kb on + strandat 259.481 kb on - strandat 259.481 kb on - strandat 259.481 kb on - strandat 259.484 kb on - strandat 259.484 kb on - strandat 259.486 kb on + strandat 259.487 kb on - strandat 259.487 kb on - strandat 259.497 kb on - strandat 259.541 kb on - strandat 259.661 kb on + strandat 259.661 kb on + strandat 259.727 kb on - strandat 259.750 kb on + strand, within CA264_01175at 259.750 kb on + strand, within CA264_01175at 259.750 kb on + strand, within CA264_01175at 259.755 kb on - strand, within CA264_01175at 259.829 kb on - strand, within CA264_01175at 259.861 kb on + strand, within CA264_01175at 259.862 kb on - strand, within CA264_01175at 259.978 kb on + strand, within CA264_01175at 259.978 kb on + strand, within CA264_01175at 259.979 kb on - strand, within CA264_01175at 259.979 kb on - strand, within CA264_01175at 259.981 kb on + strand, within CA264_01175at 259.981 kb on + strand, within CA264_01175at 259.981 kb on + strand, within CA264_01175at 260.015 kb on - strand, within CA264_01175at 260.015 kb on - strand, within CA264_01175at 260.074 kb on + strand, within CA264_01175at 260.075 kb on - strand, within CA264_01175at 260.100 kb on + strand, within CA264_01175at 260.101 kb on - strand, within CA264_01175at 260.130 kb on - strand, within CA264_01175at 260.179 kb on - strand, within CA264_01175at 260.218 kb on - strand, within CA264_01175at 260.261 kb on - strand, within CA264_01175at 260.335 kb on + strand, within CA264_01175at 260.340 kb on - strand, within CA264_01175at 260.340 kb on - strand, within CA264_01175at 260.341 kb on + strand, within CA264_01175at 260.398 kb on + strand, within CA264_01175at 260.398 kb on + strand, within CA264_01175

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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257,581 - CA264_01165 0.38 +0.1
257,584 - CA264_01165 0.38 -0.3
257,585 + CA264_01165 0.38 -1.0
257,585 + CA264_01165 0.38 +0.5
257,750 - CA264_01165 0.52 -0.5
257,783 + CA264_01165 0.54 +0.3
257,944 + CA264_01165 0.68 -0.5
257,945 - CA264_01165 0.68 -0.9
257,969 - CA264_01165 0.70 +0.3
257,997 + CA264_01165 0.72 -0.2
257,997 + CA264_01165 0.72 +2.4
258,208 + CA264_01165 0.89 +0.6
258,211 + CA264_01165 0.90 -0.6
258,297 - +0.5
258,375 + +0.3
258,375 + +0.1
258,394 + +0.1
258,395 - +1.5
258,441 - -0.1
258,477 - -1.0
258,477 - +0.0
258,477 - -0.3
258,497 - +0.3
258,535 - CA264_01170 0.12 +0.3
258,561 + CA264_01170 0.15 +0.5
258,562 - CA264_01170 0.15 -0.2
258,562 - CA264_01170 0.15 +1.5
258,600 + CA264_01170 0.18 -1.2
258,751 - CA264_01170 0.34 -0.9
258,834 + CA264_01170 0.42 -0.2
258,835 - CA264_01170 0.42 +0.3
258,835 - CA264_01170 0.42 +0.2
258,849 + CA264_01170 0.43 +0.0
258,849 + CA264_01170 0.43 -0.2
258,887 - CA264_01170 0.47 +0.0
258,949 + CA264_01170 0.53 -0.7
258,950 - CA264_01170 0.53 +0.2
258,977 + CA264_01170 0.56 -0.1
258,978 - CA264_01170 0.56 +1.1
259,027 - CA264_01170 0.61 -0.5
259,277 + CA264_01170 0.86 +1.8
259,277 + CA264_01170 0.86 +0.4
259,277 + CA264_01170 0.86 +1.1
259,278 - CA264_01170 0.86 +1.8
259,328 + -1.5
259,329 - +0.1
259,332 + -0.7
259,332 + -0.2
259,332 + -0.0
259,333 - -0.5
259,333 - -0.5
259,379 + -1.2
259,380 - -1.0
259,403 + -1.1
259,403 + -0.3
259,403 + -1.5
259,404 - -0.5
259,473 + -0.1
259,474 - +0.4
259,480 + +1.8
259,481 - -0.8
259,481 - +1.4
259,481 - +0.8
259,484 - -0.2
259,484 - -0.5
259,486 + -0.6
259,487 - +2.4
259,487 - -0.1
259,497 - -1.5
259,541 - -0.5
259,661 + +0.5
259,661 + -0.6
259,727 - -1.7
259,750 + CA264_01175 0.10 -0.6
259,750 + CA264_01175 0.10 +1.4
259,750 + CA264_01175 0.10 -1.4
259,755 - CA264_01175 0.11 +1.4
259,829 - CA264_01175 0.13 -0.6
259,861 + CA264_01175 0.14 -0.1
259,862 - CA264_01175 0.14 -0.6
259,978 + CA264_01175 0.18 +0.4
259,978 + CA264_01175 0.18 +0.3
259,979 - CA264_01175 0.18 -0.3
259,979 - CA264_01175 0.18 -0.3
259,981 + CA264_01175 0.18 -0.1
259,981 + CA264_01175 0.18 -0.4
259,981 + CA264_01175 0.18 +0.0
260,015 - CA264_01175 0.19 +0.0
260,015 - CA264_01175 0.19 +0.2
260,074 + CA264_01175 0.21 -0.0
260,075 - CA264_01175 0.21 +1.8
260,100 + CA264_01175 0.21 +1.8
260,101 - CA264_01175 0.21 -0.2
260,130 - CA264_01175 0.22 -0.7
260,179 - CA264_01175 0.24 -0.8
260,218 - CA264_01175 0.25 -0.4
260,261 - CA264_01175 0.26 -0.7
260,335 + CA264_01175 0.29 -0.5
260,340 - CA264_01175 0.29 -0.4
260,340 - CA264_01175 0.29 -0.4
260,341 + CA264_01175 0.29 +0.2
260,398 + CA264_01175 0.31 +0.4
260,398 + CA264_01175 0.31 +0.2

Or see this region's nucleotide sequence