Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00635

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00630 and CA264_00635 are separated by 118 nucleotidesCA264_00635 and CA264_00640 are separated by 287 nucleotides CA264_00630: CA264_00630 - cystathionine beta-lyase, at 138,752 to 139,882 _00630 CA264_00635: CA264_00635 - pyridoxal phosphate-dependent aminotransferase, at 140,001 to 141,092 _00635 CA264_00640: CA264_00640 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 141,380 to 142,189 _00640 Position (kb) 140 141 142Strain fitness (log2 ratio) -1 0 1 2at 139.083 kb on + strand, within CA264_00630at 139.083 kb on + strand, within CA264_00630at 139.109 kb on + strand, within CA264_00630at 139.110 kb on - strand, within CA264_00630at 139.110 kb on - strand, within CA264_00630at 139.112 kb on - strand, within CA264_00630at 139.112 kb on - strand, within CA264_00630at 139.124 kb on + strand, within CA264_00630at 139.125 kb on - strand, within CA264_00630at 139.125 kb on - strand, within CA264_00630at 139.125 kb on - strand, within CA264_00630at 139.149 kb on + strand, within CA264_00630at 139.149 kb on + strand, within CA264_00630at 139.164 kb on + strand, within CA264_00630at 139.231 kb on + strand, within CA264_00630at 139.231 kb on + strand, within CA264_00630at 139.231 kb on + strand, within CA264_00630at 139.232 kb on - strand, within CA264_00630at 139.401 kb on + strand, within CA264_00630at 139.413 kb on - strand, within CA264_00630at 139.521 kb on - strand, within CA264_00630at 139.672 kb on + strand, within CA264_00630at 139.690 kb on + strand, within CA264_00630at 139.691 kb on - strand, within CA264_00630at 139.748 kb on - strand, within CA264_00630at 139.748 kb on - strand, within CA264_00630at 139.828 kb on - strandat 139.878 kb on + strandat 139.880 kb on + strandat 139.926 kb on - strandat 139.942 kb on + strandat 139.961 kb on + strandat 140.002 kb on + strandat 140.129 kb on - strand, within CA264_00635at 140.343 kb on + strand, within CA264_00635at 140.344 kb on - strand, within CA264_00635at 140.344 kb on - strand, within CA264_00635at 140.420 kb on + strand, within CA264_00635at 140.421 kb on - strand, within CA264_00635at 140.425 kb on + strand, within CA264_00635at 140.432 kb on - strand, within CA264_00635at 140.455 kb on + strand, within CA264_00635at 140.848 kb on + strand, within CA264_00635at 140.850 kb on + strand, within CA264_00635at 140.851 kb on - strand, within CA264_00635at 140.871 kb on + strand, within CA264_00635at 140.871 kb on + strand, within CA264_00635at 140.872 kb on - strand, within CA264_00635at 140.879 kb on + strand, within CA264_00635at 140.879 kb on + strand, within CA264_00635at 140.942 kb on + strand, within CA264_00635at 141.071 kb on - strandat 141.114 kb on - strandat 141.127 kb on + strandat 141.128 kb on - strandat 141.128 kb on - strandat 141.134 kb on + strandat 141.135 kb on - strandat 141.190 kb on + strandat 141.191 kb on - strandat 141.194 kb on + strandat 141.274 kb on + strandat 141.277 kb on + strandat 141.278 kb on - strandat 141.280 kb on - strandat 141.347 kb on - strandat 141.360 kb on + strandat 141.360 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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139,083 + CA264_00630 0.29 +0.3
139,083 + CA264_00630 0.29 +0.2
139,109 + CA264_00630 0.32 +0.3
139,110 - CA264_00630 0.32 -0.2
139,110 - CA264_00630 0.32 +0.7
139,112 - CA264_00630 0.32 -0.3
139,112 - CA264_00630 0.32 +0.5
139,124 + CA264_00630 0.33 +0.5
139,125 - CA264_00630 0.33 +0.2
139,125 - CA264_00630 0.33 -1.5
139,125 - CA264_00630 0.33 +0.2
139,149 + CA264_00630 0.35 -0.6
139,149 + CA264_00630 0.35 +0.2
139,164 + CA264_00630 0.36 -0.8
139,231 + CA264_00630 0.42 -1.2
139,231 + CA264_00630 0.42 +0.2
139,231 + CA264_00630 0.42 +1.8
139,232 - CA264_00630 0.42 +0.2
139,401 + CA264_00630 0.57 +0.8
139,413 - CA264_00630 0.58 -0.3
139,521 - CA264_00630 0.68 +0.4
139,672 + CA264_00630 0.81 -0.3
139,690 + CA264_00630 0.83 +0.2
139,691 - CA264_00630 0.83 -0.5
139,748 - CA264_00630 0.88 -0.1
139,748 - CA264_00630 0.88 +0.8
139,828 - -0.0
139,878 + +0.6
139,880 + -0.4
139,926 - +0.2
139,942 + -0.3
139,961 + +0.6
140,002 + +0.3
140,129 - CA264_00635 0.12 +0.6
140,343 + CA264_00635 0.31 +0.1
140,344 - CA264_00635 0.31 +0.2
140,344 - CA264_00635 0.31 +0.1
140,420 + CA264_00635 0.38 +0.2
140,421 - CA264_00635 0.38 +1.8
140,425 + CA264_00635 0.39 -1.3
140,432 - CA264_00635 0.39 -0.4
140,455 + CA264_00635 0.42 +0.8
140,848 + CA264_00635 0.78 +0.6
140,850 + CA264_00635 0.78 +1.0
140,851 - CA264_00635 0.78 +0.2
140,871 + CA264_00635 0.80 +0.0
140,871 + CA264_00635 0.80 -0.2
140,872 - CA264_00635 0.80 -0.7
140,879 + CA264_00635 0.80 -0.9
140,879 + CA264_00635 0.80 +0.7
140,942 + CA264_00635 0.86 +1.1
141,071 - +1.8
141,114 - -0.1
141,127 + -1.4
141,128 - -0.8
141,128 - -0.2
141,134 + -0.6
141,135 - +0.0
141,190 + -0.2
141,191 - -0.0
141,194 + +0.8
141,274 + -0.4
141,277 + -0.8
141,278 - -1.5
141,280 - -0.8
141,347 - -1.2
141,360 + -0.2
141,360 + -0.2

Or see this region's nucleotide sequence