Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00210 and CA264_00215 are separated by 78 nucleotides CA264_00215 and CA264_00220 are separated by 32 nucleotides CA264_00220 and CA264_00225 are separated by 2 nucleotides CA264_00225 and CA264_00230 are separated by 354 nucleotides
CA264_00210: CA264_00210 - glycine cleavage system protein T, at 53,913 to 55,001
_00210
CA264_00215: CA264_00215 - 2-phosphosulfolactate phosphatase, at 55,080 to 55,802
_00215
CA264_00220: CA264_00220 - pyrophosphatase, at 55,835 to 56,161
_00220
CA264_00225: CA264_00225 - D-tyrosyl-tRNA(Tyr) deacylase, at 56,164 to 56,622
_00225
CA264_00230: CA264_00230 - hypothetical protein, at 56,977 to 57,624
_00230
Position (kb) 55
56
57 Strain fitness (log2 ratio) -1
0
1
2
3 at 54.962 kb on - strand at 54.986 kb on + strand at 54.986 kb on + strand at 54.993 kb on - strand at 55.037 kb on - strand at 55.091 kb on - strand at 55.091 kb on - strand at 55.774 kb on + strand at 55.858 kb on + strand at 55.962 kb on - strand, within CA264_00220 at 55.962 kb on - strand, within CA264_00220 at 56.072 kb on + strand, within CA264_00220 at 56.073 kb on - strand, within CA264_00220 at 56.088 kb on - strand, within CA264_00220 at 56.128 kb on + strand, within CA264_00220 at 56.170 kb on + strand at 56.306 kb on + strand, within CA264_00225 at 56.306 kb on + strand, within CA264_00225 at 56.339 kb on + strand, within CA264_00225 at 56.339 kb on + strand, within CA264_00225 at 56.340 kb on - strand, within CA264_00225 at 56.340 kb on - strand, within CA264_00225 at 56.340 kb on - strand, within CA264_00225 at 56.344 kb on - strand, within CA264_00225 at 56.344 kb on - strand, within CA264_00225 at 56.346 kb on - strand, within CA264_00225 at 56.346 kb on - strand, within CA264_00225 at 56.427 kb on + strand, within CA264_00225 at 56.431 kb on + strand, within CA264_00225 at 56.432 kb on - strand, within CA264_00225 at 56.432 kb on - strand, within CA264_00225 at 56.432 kb on - strand, within CA264_00225 at 56.442 kb on + strand, within CA264_00225 at 56.567 kb on - strand, within CA264_00225 at 56.652 kb on - strand at 56.676 kb on - strand at 56.681 kb on + strand at 56.682 kb on - strand at 56.841 kb on + strand at 56.842 kb on - strand at 56.866 kb on + strand at 56.867 kb on - strand at 56.867 kb on - strand at 56.874 kb on + strand at 56.874 kb on + strand at 56.875 kb on - strand at 56.877 kb on - strand at 56.927 kb on + strand at 56.983 kb on + strand at 56.984 kb on - strand at 56.984 kb on - strand at 56.987 kb on + strand at 56.987 kb on + strand at 56.997 kb on - strand at 56.997 kb on - strand at 57.030 kb on - strand at 57.044 kb on - strand, within CA264_00230 at 57.045 kb on + strand, within CA264_00230 at 57.046 kb on - strand, within CA264_00230 at 57.046 kb on - strand, within CA264_00230 at 57.102 kb on + strand, within CA264_00230
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 54,962 - -0.2 54,986 + +0.1 54,986 + -0.1 54,993 - +0.8 55,037 - -0.6 55,091 - -0.1 55,091 - -0.0 55,774 + -0.3 55,858 + +1.0 55,962 - CA264_00220 0.39 -0.2 55,962 - CA264_00220 0.39 +0.3 56,072 + CA264_00220 0.72 +0.1 56,073 - CA264_00220 0.73 +0.1 56,088 - CA264_00220 0.77 +0.0 56,128 + CA264_00220 0.90 +0.5 56,170 + -0.8 56,306 + CA264_00225 0.31 -0.1 56,306 + CA264_00225 0.31 +3.4 56,339 + CA264_00225 0.38 -0.2 56,339 + CA264_00225 0.38 +0.4 56,340 - CA264_00225 0.38 +2.4 56,340 - CA264_00225 0.38 +0.0 56,340 - CA264_00225 0.38 -0.0 56,344 - CA264_00225 0.39 +2.4 56,344 - CA264_00225 0.39 -0.5 56,346 - CA264_00225 0.40 -0.2 56,346 - CA264_00225 0.40 -0.2 56,427 + CA264_00225 0.57 +1.3 56,431 + CA264_00225 0.58 +1.2 56,432 - CA264_00225 0.58 -0.1 56,432 - CA264_00225 0.58 -0.5 56,432 - CA264_00225 0.58 -0.7 56,442 + CA264_00225 0.61 +0.0 56,567 - CA264_00225 0.88 -1.1 56,652 - -0.9 56,676 - +1.8 56,681 + -0.1 56,682 - -0.2 56,841 + -0.7 56,842 - -1.1 56,866 + +0.5 56,867 - -0.3 56,867 - +0.1 56,874 + +0.4 56,874 + -0.8 56,875 - -0.4 56,877 - -1.2 56,927 + +1.5 56,983 + -0.2 56,984 - -0.1 56,984 - -0.3 56,987 + +0.2 56,987 + +0.2 56,997 - -0.9 56,997 - -1.4 57,030 - -0.9 57,044 - CA264_00230 0.10 -1.0 57,045 + CA264_00230 0.10 -1.1 57,046 - CA264_00230 0.11 -0.4 57,046 - CA264_00230 0.11 -0.2 57,102 + CA264_00230 0.19 -0.6
Or see this region's nucleotide sequence