Experiment: Xylobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0499 and Atu0500 overlap by 71 nucleotides Atu0500 and Atu0501 are separated by 165 nucleotides Atu0501 and Atu0502 are separated by 38 nucleotides
Atu0499: Atu0499 - hypothetical protein, at 485,874 to 489,620
Atu0499
Atu0500: Atu0500 - hypothetical protein, at 489,550 to 489,831
Atu0500
Atu0501: Atu0501 - acyl-CoA dehydrogenase, at 489,997 to 491,793
Atu0501
Atu0502: Atu0502 - acetyl-CoA acetyltransferase, at 491,832 to 493,040
Atu0502
Position (kb) 489
490
491
492 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 489.200 kb on - strand, within Atu0499 at 489.228 kb on + strand, within Atu0499 at 489.451 kb on - strand at 489.606 kb on - strand at 489.986 kb on - strand at 490.026 kb on - strand at 490.090 kb on - strand at 490.107 kb on + strand at 490.168 kb on - strand at 490.188 kb on - strand, within Atu0501 at 490.190 kb on - strand, within Atu0501 at 490.238 kb on - strand, within Atu0501 at 490.274 kb on + strand, within Atu0501 at 490.382 kb on + strand, within Atu0501 at 490.473 kb on + strand, within Atu0501 at 490.481 kb on + strand, within Atu0501 at 490.489 kb on - strand, within Atu0501 at 490.532 kb on - strand, within Atu0501 at 490.538 kb on - strand, within Atu0501 at 490.652 kb on - strand, within Atu0501 at 490.739 kb on + strand, within Atu0501 at 490.818 kb on + strand, within Atu0501 at 490.826 kb on - strand, within Atu0501 at 490.856 kb on - strand, within Atu0501 at 490.889 kb on + strand, within Atu0501 at 490.897 kb on - strand, within Atu0501 at 490.955 kb on + strand, within Atu0501 at 490.960 kb on + strand, within Atu0501 at 490.968 kb on - strand, within Atu0501 at 490.968 kb on - strand, within Atu0501 at 491.050 kb on - strand, within Atu0501 at 491.220 kb on + strand, within Atu0501 at 491.279 kb on + strand, within Atu0501 at 491.330 kb on + strand, within Atu0501 at 491.405 kb on - strand, within Atu0501 at 491.453 kb on - strand, within Atu0501 at 491.582 kb on + strand, within Atu0501 at 491.592 kb on + strand, within Atu0501 at 491.592 kb on + strand, within Atu0501 at 491.592 kb on + strand, within Atu0501 at 491.694 kb on + strand at 491.804 kb on - strand at 491.896 kb on - strand at 492.106 kb on - strand, within Atu0502 at 492.143 kb on + strand, within Atu0502 at 492.151 kb on - strand, within Atu0502 at 492.332 kb on + strand, within Atu0502 at 492.413 kb on + strand, within Atu0502 at 492.414 kb on + strand, within Atu0502 at 492.496 kb on - strand, within Atu0502 at 492.508 kb on - strand, within Atu0502 at 492.637 kb on + strand, within Atu0502 at 492.637 kb on + strand, within Atu0502 at 492.637 kb on + strand, within Atu0502 at 492.645 kb on - strand, within Atu0502 at 492.645 kb on - strand, within Atu0502 at 492.683 kb on + strand, within Atu0502 at 492.683 kb on + strand, within Atu0502 at 492.683 kb on + strand, within Atu0502
Per-strain Table
Position Strand Gene LocusTag Fraction Xylobiose (C) remove 489,200 - Atu0499 0.89 +1.3 489,228 + Atu0499 0.90 +0.2 489,451 - -1.4 489,606 - -2.1 489,986 - -0.5 490,026 - -4.1 490,090 - -1.8 490,107 + -3.9 490,168 - -4.2 490,188 - Atu0501 0.11 -3.3 490,190 - Atu0501 0.11 -2.2 490,238 - Atu0501 0.13 -3.9 490,274 + Atu0501 0.15 -2.7 490,382 + Atu0501 0.21 -3.8 490,473 + Atu0501 0.26 -2.5 490,481 + Atu0501 0.27 -3.0 490,489 - Atu0501 0.27 -3.8 490,532 - Atu0501 0.30 -1.5 490,538 - Atu0501 0.30 -2.0 490,652 - Atu0501 0.36 -2.8 490,739 + Atu0501 0.41 -4.4 490,818 + Atu0501 0.46 -3.1 490,826 - Atu0501 0.46 -2.7 490,856 - Atu0501 0.48 -4.2 490,889 + Atu0501 0.50 -2.6 490,897 - Atu0501 0.50 -4.1 490,955 + Atu0501 0.53 -3.6 490,960 + Atu0501 0.54 -1.0 490,968 - Atu0501 0.54 -4.0 490,968 - Atu0501 0.54 -2.6 491,050 - Atu0501 0.59 -3.9 491,220 + Atu0501 0.68 -0.3 491,279 + Atu0501 0.71 -2.7 491,330 + Atu0501 0.74 +0.2 491,405 - Atu0501 0.78 -5.8 491,453 - Atu0501 0.81 -1.6 491,582 + Atu0501 0.88 -4.3 491,592 + Atu0501 0.89 -0.5 491,592 + Atu0501 0.89 -4.0 491,592 + Atu0501 0.89 -0.8 491,694 + +0.8 491,804 - -0.0 491,896 - -3.9 492,106 - Atu0502 0.23 -2.9 492,143 + Atu0502 0.26 -1.2 492,151 - Atu0502 0.26 -1.7 492,332 + Atu0502 0.41 -2.4 492,413 + Atu0502 0.48 -2.4 492,414 + Atu0502 0.48 -2.9 492,496 - Atu0502 0.55 -3.1 492,508 - Atu0502 0.56 -1.9 492,637 + Atu0502 0.67 -1.8 492,637 + Atu0502 0.67 -2.0 492,637 + Atu0502 0.67 -0.5 492,645 - Atu0502 0.67 -3.5 492,645 - Atu0502 0.67 -1.4 492,683 + Atu0502 0.70 -3.8 492,683 + Atu0502 0.70 -3.1 492,683 + Atu0502 0.70 -1.8
Or see this region's nucleotide sequence