Strain Fitness in Escherichia coli BW25113 around b2328

Experiment: Cholin acetate 75 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyfcM and yfcA overlap by 1 nucleotidesyfcA and mepA overlap by 1 nucleotidesmepA and aroC are separated by 3 nucleotides b2326: yfcM - hypothetical protein (NCBI), at 2,442,225 to 2,442,773 yfcM b2327: yfcA - conserved inner membrane protein (NCBI), at 2,442,773 to 2,443,582 yfcA b2328: mepA - penicillin-insensitive murein endopeptidase (NCBI), at 2,443,582 to 2,444,406 mepA b2329: aroC - chorismate synthase (NCBI), at 2,444,410 to 2,445,495 aroC Position (kb) 2443 2444 2445Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2442.583 kb on - strand, within yfcMat 2442.647 kb on - strand, within yfcMat 2442.647 kb on - strand, within yfcMat 2442.696 kb on - strand, within yfcMat 2442.758 kb on + strandat 2442.758 kb on + strandat 2442.758 kb on + strandat 2442.766 kb on - strandat 2442.766 kb on - strandat 2442.766 kb on - strandat 2442.766 kb on - strandat 2442.777 kb on - strandat 2442.807 kb on - strandat 2442.887 kb on + strand, within yfcAat 2442.887 kb on + strand, within yfcAat 2442.887 kb on + strand, within yfcAat 2442.887 kb on + strand, within yfcAat 2442.898 kb on + strand, within yfcAat 2442.906 kb on - strand, within yfcAat 2442.906 kb on - strand, within yfcAat 2442.948 kb on - strand, within yfcAat 2442.976 kb on + strand, within yfcAat 2442.985 kb on + strand, within yfcAat 2443.071 kb on - strand, within yfcAat 2443.161 kb on + strand, within yfcAat 2443.293 kb on - strand, within yfcAat 2443.330 kb on + strand, within yfcAat 2443.700 kb on - strand, within mepAat 2443.700 kb on - strand, within mepAat 2443.705 kb on + strand, within mepAat 2443.770 kb on + strand, within mepAat 2443.778 kb on - strand, within mepAat 2443.778 kb on - strand, within mepAat 2443.782 kb on - strand, within mepAat 2443.797 kb on - strand, within mepAat 2443.797 kb on - strand, within mepAat 2443.817 kb on - strand, within mepAat 2443.817 kb on - strand, within mepAat 2443.897 kb on + strand, within mepAat 2444.082 kb on - strand, within mepAat 2444.245 kb on - strand, within mepAat 2444.245 kb on - strand, within mepAat 2444.256 kb on + strand, within mepAat 2444.552 kb on - strand, within aroCat 2444.844 kb on + strand, within aroCat 2444.866 kb on - strand, within aroCat 2444.923 kb on - strand, within aroCat 2444.997 kb on - strand, within aroCat 2444.997 kb on - strand, within aroCat 2445.075 kb on + strand, within aroCat 2445.075 kb on + strand, within aroCat 2445.180 kb on + strand, within aroCat 2445.213 kb on + strand, within aroCat 2445.213 kb on + strand, within aroCat 2445.219 kb on - strand, within aroCat 2445.219 kb on - strand, within aroCat 2445.244 kb on + strand, within aroCat 2445.326 kb on + strand, within aroCat 2445.326 kb on + strand, within aroCat 2445.337 kb on - strand, within aroCat 2445.337 kb on - strand, within aroC

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 75 mM
remove
2,442,583 - yfcM b2326 0.65 +0.3
2,442,647 - yfcM b2326 0.77 -0.0
2,442,647 - yfcM b2326 0.77 -0.7
2,442,696 - yfcM b2326 0.86 +1.3
2,442,758 + +0.5
2,442,758 + -2.0
2,442,758 + -0.2
2,442,766 - -0.2
2,442,766 - +1.8
2,442,766 - -0.6
2,442,766 - +0.8
2,442,777 - +0.4
2,442,807 - +0.3
2,442,887 + yfcA b2327 0.14 +0.4
2,442,887 + yfcA b2327 0.14 +0.3
2,442,887 + yfcA b2327 0.14 -0.2
2,442,887 + yfcA b2327 0.14 -0.0
2,442,898 + yfcA b2327 0.15 -0.4
2,442,906 - yfcA b2327 0.16 -0.2
2,442,906 - yfcA b2327 0.16 -0.2
2,442,948 - yfcA b2327 0.22 +0.3
2,442,976 + yfcA b2327 0.25 -0.7
2,442,985 + yfcA b2327 0.26 -2.0
2,443,071 - yfcA b2327 0.37 +1.0
2,443,161 + yfcA b2327 0.48 -0.3
2,443,293 - yfcA b2327 0.64 -0.6
2,443,330 + yfcA b2327 0.69 +0.0
2,443,700 - mepA b2328 0.14 +0.1
2,443,700 - mepA b2328 0.14 +0.5
2,443,705 + mepA b2328 0.15 +0.6
2,443,770 + mepA b2328 0.23 +0.1
2,443,778 - mepA b2328 0.24 -0.5
2,443,778 - mepA b2328 0.24 +0.8
2,443,782 - mepA b2328 0.24 -1.0
2,443,797 - mepA b2328 0.26 +1.4
2,443,797 - mepA b2328 0.26 -0.9
2,443,817 - mepA b2328 0.28 -0.6
2,443,817 - mepA b2328 0.28 -0.7
2,443,897 + mepA b2328 0.38 -1.2
2,444,082 - mepA b2328 0.61 -0.2
2,444,245 - mepA b2328 0.80 -0.2
2,444,245 - mepA b2328 0.80 -0.4
2,444,256 + mepA b2328 0.82 +0.1
2,444,552 - aroC b2329 0.13 -0.2
2,444,844 + aroC b2329 0.40 +0.8
2,444,866 - aroC b2329 0.42 -0.3
2,444,923 - aroC b2329 0.47 -0.7
2,444,997 - aroC b2329 0.54 -0.2
2,444,997 - aroC b2329 0.54 -0.2
2,445,075 + aroC b2329 0.61 +0.4
2,445,075 + aroC b2329 0.61 +3.4
2,445,180 + aroC b2329 0.71 +0.0
2,445,213 + aroC b2329 0.74 +0.3
2,445,213 + aroC b2329 0.74 +1.1
2,445,219 - aroC b2329 0.74 +1.6
2,445,219 - aroC b2329 0.74 +0.4
2,445,244 + aroC b2329 0.77 +0.4
2,445,326 + aroC b2329 0.84 +0.5
2,445,326 + aroC b2329 0.84 +0.7
2,445,337 - aroC b2329 0.85 +0.3
2,445,337 - aroC b2329 0.85 -0.5

Or see this region's nucleotide sequence