Strain Fitness in Pseudomonas sp. RS175 around PFR28_04059

Experiment: D-(+)-Galactosamine (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-(+)-Galactosamine (C) 10 mM
4,634,111	-		PFR28_04057	0.82	+0.3
4,634,343	+				+0.3
4,634,344	-				+0.6
4,634,445	-		PFR28_04058	0.19	-1.2
4,634,511	-		PFR28_04058	0.27	+0.5
4,634,511	-		PFR28_04058	0.27	-1.6
4,634,511	-		PFR28_04058	0.27	-0.1
4,634,511	-		PFR28_04058	0.27	-1.5
4,634,553	-		PFR28_04058	0.33	+0.8
4,634,553	-		PFR28_04058	0.33	+0.9
4,634,724	-		PFR28_04058	0.55	+0.1
4,634,835	+		PFR28_04058	0.69	-0.4
4,634,893	+		PFR28_04058	0.77	-0.9
4,634,893	+		PFR28_04058	0.77	-0.3
4,634,893	+		PFR28_04058	0.77	+1.2
4,634,893	+		PFR28_04058	0.77	-0.1
4,634,893	+		PFR28_04058	0.77	-1.3
4,634,893	+		PFR28_04058	0.77	+0.3
4,634,893	+		PFR28_04058	0.77	+0.4
4,634,893	+		PFR28_04058	0.77	-0.3
4,634,893	+		PFR28_04058	0.77	-0.3
4,634,893	+		PFR28_04058	0.77	+0.8
4,634,893	+		PFR28_04058	0.77	-1.6
4,634,894	-		PFR28_04058	0.77	-0.7
4,634,894	-		PFR28_04058	0.77	+0.3
4,634,894	-		PFR28_04058	0.77	-0.1
4,634,894	-		PFR28_04058	0.77	-1.3
4,634,894	-		PFR28_04058	0.77	-0.2
4,634,894	-		PFR28_04058	0.77	+1.3
4,634,894	-		PFR28_04058	0.77	-3.4
4,634,894	-		PFR28_04058	0.77	-0.1
4,634,894	-		PFR28_04058	0.77	-0.9
4,634,894	-		PFR28_04058	0.77	+0.4
4,634,894	-		PFR28_04058	0.77	-1.0
4,634,894	-		PFR28_04058	0.77	+0.2
4,634,909	-		PFR28_04058	0.79	-1.9
4,635,069	+				-1.3
4,635,069	+				-1.4
4,635,069	+				+0.5
4,635,069	+				+0.1
4,635,069	+				+0.9
4,635,069	+				+0.1
4,635,069	+				-0.9
4,635,069	+				+0.9
4,635,069	+				+0.3
4,635,070	-				-1.0
4,635,070	-				+1.0
4,635,070	-				+0.6
4,635,070	-				-0.1
4,635,070	-				+0.3
4,635,070	-				-0.6
4,635,070	-				+1.7
4,635,070	-				-0.9
4,635,086	+				-2.2
4,635,086	+				-0.0
4,635,086	+				-0.2
4,635,086	+				+0.2
4,635,087	-				-0.1
4,635,087	-				-2.5
4,635,087	-				+0.1
4,635,087	-				+1.3
4,635,087	-				+0.5
4,635,087	-				-0.3
4,635,262	+		PFR28_04059	0.28	-1.9
4,635,263	-		PFR28_04059	0.29	-0.7
4,635,263	-		PFR28_04059	0.29	-0.7
4,635,264	+		PFR28_04059	0.29	-1.1
4,635,264	+		PFR28_04059	0.29	-0.4
4,635,264	+		PFR28_04059	0.29	-1.2
4,635,264	+		PFR28_04059	0.29	-2.2
4,635,264	+		PFR28_04059	0.29	-2.0
4,635,264	+		PFR28_04059	0.29	-0.9
4,635,264	+		PFR28_04059	0.29	-2.9
4,635,264	+		PFR28_04059	0.29	-1.9
4,635,264	+		PFR28_04059	0.29	+0.6
4,635,265	-		PFR28_04059	0.29	+0.7
4,635,265	-		PFR28_04059	0.29	-3.5
4,635,265	-		PFR28_04059	0.29	-3.4
4,635,265	-		PFR28_04059	0.29	-0.4
4,635,265	-		PFR28_04059	0.29	-1.1
4,635,265	-		PFR28_04059	0.29	-0.2
4,635,265	-		PFR28_04059	0.29	-0.5
4,635,265	-		PFR28_04059	0.29	-1.5
4,635,265	-		PFR28_04059	0.29	-4.5
4,635,419	+		PFR28_04059	0.52	-3.7
4,635,419	+		PFR28_04059	0.52	-2.1
4,635,419	+		PFR28_04059	0.52	-0.1
4,635,419	+		PFR28_04059	0.52	-1.1
4,635,419	+		PFR28_04059	0.52	-3.2
4,635,419	+		PFR28_04059	0.52	-0.5
4,635,419	+		PFR28_04059	0.52	-2.0
4,635,419	+		PFR28_04059	0.52	-1.2
4,635,419	+		PFR28_04059	0.52	-0.9
4,635,419	+		PFR28_04059	0.52	-2.7
4,635,419	+		PFR28_04059	0.52	-0.8
4,635,419	+		PFR28_04059	0.52	-2.2
4,635,419	+		PFR28_04059	0.52	-0.6
4,635,419	+		PFR28_04059	0.52	-0.4
4,635,419	+		PFR28_04059	0.52	+0.0
4,635,419	+		PFR28_04059	0.52	-3.5
4,635,420	-		PFR28_04059	0.52	+1.3
4,635,420	-		PFR28_04059	0.52	-2.7
4,635,420	-		PFR28_04059	0.52	-1.5
4,635,420	-		PFR28_04059	0.52	-2.8
4,635,420	-		PFR28_04059	0.52	-1.5
4,635,420	-		PFR28_04059	0.52	-3.0
4,635,420	-		PFR28_04059	0.52	-1.5
4,635,420	-		PFR28_04059	0.52	-1.3
4,635,420	-		PFR28_04059	0.52	-0.6
4,635,420	-		PFR28_04059	0.52	-1.5
4,635,420	-		PFR28_04059	0.52	-0.0
4,635,420	-		PFR28_04059	0.52	-2.3
4,635,420	-		PFR28_04059	0.52	-3.8
4,635,420	-		PFR28_04059	0.52	-3.9
4,635,420	-		PFR28_04059	0.52	-1.1
4,635,420	-		PFR28_04059	0.52	-1.2
4,635,420	-		PFR28_04059	0.52	-2.2
4,635,420	-		PFR28_04059	0.52	+0.1
4,635,420	-		PFR28_04059	0.52	-1.0
4,635,420	-		PFR28_04059	0.52	-2.5
4,635,420	-		PFR28_04059	0.52	-1.9
4,635,420	-		PFR28_04059	0.52	-0.7
4,635,421	+		PFR28_04059	0.52	-0.8
4,635,421	+		PFR28_04059	0.52	-4.1
4,635,421	+		PFR28_04059	0.52	-0.7
4,635,421	+		PFR28_04059	0.52	-3.0
4,635,421	+		PFR28_04059	0.52	-4.0
4,635,421	+		PFR28_04059	0.52	-0.9
4,635,421	+		PFR28_04059	0.52	-1.3
4,635,421	+		PFR28_04059	0.52	-1.8
4,635,421	+		PFR28_04059	0.52	-1.6
4,635,421	+		PFR28_04059	0.52	+0.1
4,635,422	-		PFR28_04059	0.52	-1.7
4,635,422	-		PFR28_04059	0.52	-2.3
4,635,422	-		PFR28_04059	0.52	-2.3
4,635,422	-		PFR28_04059	0.52	-0.9
4,635,422	-		PFR28_04059	0.52	-1.7
4,635,422	-		PFR28_04059	0.52	-2.1
4,635,422	-		PFR28_04059	0.52	-1.1
4,635,422	-		PFR28_04059	0.52	-0.3
4,635,422	-		PFR28_04059	0.52	-2.4
4,635,636	+		PFR28_04059	0.84	-1.4
4,635,636	+		PFR28_04059	0.84	-0.6
4,635,826	+				-4.5
4,635,826	+				-0.5
4,635,826	+				+1.7
4,635,826	+				-1.8
4,635,826	+				-0.7
4,635,826	+				-1.2
4,635,826	+				+0.3
4,635,826	+				-2.4
4,635,826	+				-3.1
4,635,826	+				-0.0
4,635,826	+				-0.8
4,635,826	+				-1.8
4,635,826	+				-2.9
4,635,826	+				-2.0
4,635,826	+				-1.1
4,635,826	+				-0.0
4,635,826	+				-2.1
4,635,826	+				-3.3
4,635,826	+				-2.5
4,635,827	-				-0.5
4,635,827	-				+0.7
4,635,827	-				-3.1
4,635,827	-				-3.2
4,635,827	-				-0.6
4,635,827	-				-1.9
4,635,827	-				-1.6
4,635,827	-				-2.7
4,635,827	-				+0.1
4,635,827	-				-0.5
4,635,827	-				-3.4
4,635,827	-				-1.5
4,635,827	-				-1.1
4,635,827	-				-0.0
4,635,827	-				-2.3
4,635,827	-				-1.2
4,635,827	-				-0.1
4,635,827	-				-4.4
4,635,827	-				-1.3
4,635,827	-				-1.4
4,635,828	+				-1.4
4,635,828	+				-2.5
4,635,828	+				-1.7
4,635,829	-				-0.4
4,635,829	-				-1.4
4,635,829	-				-1.6
4,635,829	-				-0.7
4,635,829	-				-0.4
4,635,829	-				-1.2
4,635,829	-				-2.7
4,635,830	+				-0.6
4,635,830	+				-1.4
4,635,830	+				-1.7
4,635,830	+				-1.6
4,635,831	-				-0.9
4,635,831	-				-3.1
4,635,831	-				+1.1
4,635,831	-				-0.7
4,635,831	-				-2.5
4,635,831	-				-1.7
4,635,831	-				-1.3
4,635,831	-				-2.2
4,636,007	+		PFR28_04060	0.26	-1.5
4,636,008	-		PFR28_04060	0.26	-1.4
4,636,008	-		PFR28_04060	0.26	-1.8
4,636,008	-		PFR28_04060	0.26	-1.9
4,636,082	+		PFR28_04060	0.33	-2.7
4,636,082	+		PFR28_04060	0.33	-2.5
4,636,082	+		PFR28_04060	0.33	-1.2
4,636,082	+		PFR28_04060	0.33	-2.0
4,636,082	+		PFR28_04060	0.33	-2.0
4,636,083	-		PFR28_04060	0.34	-3.0
4,636,083	-		PFR28_04060	0.34	-3.7
4,636,083	-		PFR28_04060	0.34	-0.8
4,636,083	-		PFR28_04060	0.34	-2.7
4,636,083	-		PFR28_04060	0.34	-3.6
4,636,098	-		PFR28_04060	0.35	-3.1
4,636,161	+		PFR28_04060	0.41	-2.2
4,636,161	+		PFR28_04060	0.41	-0.8
4,636,161	+		PFR28_04060	0.41	-0.7
4,636,161	+		PFR28_04060	0.41	-2.3
4,636,161	+		PFR28_04060	0.41	-1.6
4,636,162	-		PFR28_04060	0.41	-1.5
4,636,162	-		PFR28_04060	0.41	-0.8
4,636,162	-		PFR28_04060	0.41	-2.0
4,636,162	-		PFR28_04060	0.41	-1.2
4,636,162	-		PFR28_04060	0.41	-3.2
4,636,162	-		PFR28_04060	0.41	-1.9
4,636,163	+		PFR28_04060	0.41	-2.8
4,636,163	+		PFR28_04060	0.41	-0.1
4,636,163	+		PFR28_04060	0.41	-1.6
4,636,163	+		PFR28_04060	0.41	-2.3
4,636,163	+		PFR28_04060	0.41	-0.4
4,636,163	+		PFR28_04060	0.41	-3.2
4,636,163	+		PFR28_04060	0.41	-0.9
4,636,163	+		PFR28_04060	0.41	-0.4
4,636,163	+		PFR28_04060	0.41	-2.3
4,636,163	+		PFR28_04060	0.41	-0.6
4,636,163	+		PFR28_04060	0.41	-2.1
4,636,163	+		PFR28_04060	0.41	-0.9
4,636,163	+		PFR28_04060	0.41	-1.5
4,636,164	-		PFR28_04060	0.41	-2.9
4,636,164	-		PFR28_04060	0.41	-2.7
4,636,164	-		PFR28_04060	0.41	-3.2
4,636,164	-		PFR28_04060	0.41	-2.9
4,636,164	-		PFR28_04060	0.41	-1.4
4,636,164	-		PFR28_04060	0.41	-1.2
4,636,164	-		PFR28_04060	0.41	-1.4
4,636,164	-		PFR28_04060	0.41	-1.0
4,636,164	-		PFR28_04060	0.41	-0.7
4,636,174	+		PFR28_04060	0.42	-0.8
4,636,174	+		PFR28_04060	0.42	-2.8
4,636,174	+		PFR28_04060	0.42	-3.1
4,636,174	+		PFR28_04060	0.42	-2.3
4,636,174	+		PFR28_04060	0.42	-0.5
4,636,174	+		PFR28_04060	0.42	-2.0
4,636,174	+		PFR28_04060	0.42	-3.2
4,636,174	+		PFR28_04060	0.42	+0.2
4,636,175	-		PFR28_04060	0.42	-1.5
4,636,175	-		PFR28_04060	0.42	-2.2
4,636,175	-		PFR28_04060	0.42	-1.2
4,636,175	-		PFR28_04060	0.42	-3.4
4,636,175	-		PFR28_04060	0.42	-0.3
4,636,175	-		PFR28_04060	0.42	-1.5
4,636,283	+		PFR28_04060	0.53	+1.1
4,636,284	-		PFR28_04060	0.53	-4.3
4,636,284	-		PFR28_04060	0.53	-1.8
4,636,284	-		PFR28_04060	0.53	-1.3
4,636,331	+		PFR28_04060	0.58	-1.5
4,636,331	+		PFR28_04060	0.58	-3.9
4,636,332	-		PFR28_04060	0.58	-2.3
4,636,332	-		PFR28_04060	0.58	-1.6
4,636,436	+		PFR28_04060	0.68	-2.5
4,636,437	-		PFR28_04060	0.68	-1.4