Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04095 and PS417_04100 overlap by 8 nucleotides PS417_04100 and PS417_04105 are separated by 111 nucleotides PS417_04105 and PS417_04110 are separated by 188 nucleotides PS417_04110 and PS417_04115 are separated by 141 nucleotides
PS417_04095: PS417_04095 - histidine kinase, at 920,869 to 922,131
_04095
PS417_04100: PS417_04100 - chemotaxis protein CheY, at 922,124 to 922,684
_04100
PS417_04105: PS417_04105 - ABC transporter ATP-binding protein, at 922,796 to 924,520
_04105
PS417_04110: PS417_04110 - cytochrome D ubiquinol oxidase subunit III, at 924,709 to 925,146
_04110
PS417_04115: PS417_04115 - alpha/beta hydrolase, at 925,288 to 925,923
_04115
Position (kb) 922
923
924
925 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 922.749 kb on - strand at 922.749 kb on - strand at 922.982 kb on + strand, within PS417_04105 at 922.982 kb on + strand, within PS417_04105 at 922.982 kb on + strand, within PS417_04105 at 922.983 kb on - strand, within PS417_04105 at 922.983 kb on - strand, within PS417_04105 at 922.983 kb on - strand, within PS417_04105 at 923.096 kb on + strand, within PS417_04105 at 923.096 kb on + strand, within PS417_04105 at 923.147 kb on + strand, within PS417_04105 at 923.148 kb on - strand, within PS417_04105 at 923.177 kb on + strand, within PS417_04105 at 923.178 kb on - strand, within PS417_04105 at 923.202 kb on - strand, within PS417_04105 at 923.242 kb on + strand, within PS417_04105 at 923.242 kb on + strand, within PS417_04105 at 923.242 kb on + strand, within PS417_04105 at 923.243 kb on - strand, within PS417_04105 at 923.274 kb on + strand, within PS417_04105 at 923.275 kb on - strand at 923.275 kb on - strand, within PS417_04105 at 923.275 kb on - strand, within PS417_04105 at 923.362 kb on + strand, within PS417_04105 at 923.362 kb on + strand, within PS417_04105 at 923.363 kb on - strand at 923.373 kb on - strand, within PS417_04105 at 923.373 kb on - strand, within PS417_04105 at 923.373 kb on - strand, within PS417_04105 at 923.373 kb on - strand, within PS417_04105 at 923.525 kb on - strand, within PS417_04105 at 923.535 kb on - strand, within PS417_04105 at 923.594 kb on - strand, within PS417_04105 at 923.597 kb on + strand, within PS417_04105 at 923.597 kb on + strand, within PS417_04105 at 923.597 kb on + strand, within PS417_04105 at 923.598 kb on - strand, within PS417_04105 at 923.598 kb on - strand, within PS417_04105 at 923.598 kb on - strand, within PS417_04105 at 923.598 kb on - strand, within PS417_04105 at 923.697 kb on - strand, within PS417_04105 at 923.886 kb on + strand, within PS417_04105 at 923.969 kb on - strand, within PS417_04105 at 923.999 kb on + strand, within PS417_04105 at 924.194 kb on + strand, within PS417_04105 at 924.195 kb on - strand, within PS417_04105 at 924.338 kb on + strand, within PS417_04105 at 924.338 kb on + strand, within PS417_04105 at 924.338 kb on + strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.339 kb on - strand, within PS417_04105 at 924.390 kb on - strand at 924.561 kb on + strand at 924.568 kb on + strand at 924.568 kb on + strand at 924.569 kb on - strand at 924.710 kb on + strand at 924.726 kb on - strand at 925.203 kb on - strand at 925.203 kb on - strand at 925.245 kb on - strand at 925.426 kb on - strand, within PS417_04115 at 925.426 kb on - strand, within PS417_04115 at 925.433 kb on + strand, within PS417_04115 at 925.474 kb on - strand, within PS417_04115
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 922,749 - +0.6 922,749 - -0.8 922,982 + PS417_04105 0.11 +0.3 922,982 + PS417_04105 0.11 +0.1 922,982 + PS417_04105 0.11 -0.1 922,983 - PS417_04105 0.11 +1.5 922,983 - PS417_04105 0.11 -0.4 922,983 - PS417_04105 0.11 +0.2 923,096 + PS417_04105 0.17 +0.5 923,096 + PS417_04105 0.17 +0.0 923,147 + PS417_04105 0.20 -2.5 923,148 - PS417_04105 0.20 +0.5 923,177 + PS417_04105 0.22 -1.7 923,178 - PS417_04105 0.22 -0.0 923,202 - PS417_04105 0.24 +0.4 923,242 + PS417_04105 0.26 -0.6 923,242 + PS417_04105 0.26 +1.5 923,242 + PS417_04105 0.26 +0.7 923,243 - PS417_04105 0.26 +0.7 923,274 + PS417_04105 0.28 +0.0 923,275 - +2.6 923,275 - PS417_04105 0.28 -3.5 923,275 - PS417_04105 0.28 -2.0 923,362 + PS417_04105 0.33 -2.6 923,362 + PS417_04105 0.33 +1.3 923,363 - +1.2 923,373 - PS417_04105 0.33 +1.1 923,373 - PS417_04105 0.33 +1.2 923,373 - PS417_04105 0.33 +0.5 923,373 - PS417_04105 0.33 -0.0 923,525 - PS417_04105 0.42 -1.2 923,535 - PS417_04105 0.43 +1.2 923,594 - PS417_04105 0.46 +1.2 923,597 + PS417_04105 0.46 +0.6 923,597 + PS417_04105 0.46 +1.7 923,597 + PS417_04105 0.46 +0.5 923,598 - PS417_04105 0.46 -0.2 923,598 - PS417_04105 0.46 -1.4 923,598 - PS417_04105 0.46 +0.3 923,598 - PS417_04105 0.46 +0.3 923,697 - PS417_04105 0.52 +2.6 923,886 + PS417_04105 0.63 +0.7 923,969 - PS417_04105 0.68 +0.1 923,999 + PS417_04105 0.70 -0.3 924,194 + PS417_04105 0.81 +0.2 924,195 - PS417_04105 0.81 +1.7 924,338 + PS417_04105 0.89 +0.3 924,338 + PS417_04105 0.89 -1.6 924,338 + PS417_04105 0.89 +1.2 924,339 - PS417_04105 0.89 +0.7 924,339 - PS417_04105 0.89 +1.3 924,339 - PS417_04105 0.89 -0.7 924,339 - PS417_04105 0.89 -0.2 924,339 - PS417_04105 0.89 -2.2 924,339 - PS417_04105 0.89 -0.2 924,339 - PS417_04105 0.89 -0.6 924,339 - PS417_04105 0.89 +0.0 924,390 - +0.4 924,561 + +0.3 924,568 + -0.2 924,568 + +1.3 924,569 - +1.8 924,710 + -1.2 924,726 - -1.2 925,203 - -1.8 925,203 - -2.8 925,245 - +0.3 925,426 - PS417_04115 0.22 -1.3 925,426 - PS417_04115 0.22 +1.0 925,433 + PS417_04115 0.23 -1.1 925,474 - PS417_04115 0.29 -2.2
Or see this region's nucleotide sequence