Strain Fitness in Pseudomonas simiae WCS417 around PS417_03505

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03495 and PS417_03500 are separated by 10 nucleotidesPS417_03500 and PS417_03505 overlap by 4 nucleotidesPS417_03505 and PS417_03510 are separated by 0 nucleotidesPS417_03510 and PS417_03515 are separated by 11 nucleotidesPS417_03515 and PS417_03520 overlap by 4 nucleotides PS417_03495: PS417_03495 - type III secretory protein EscS, at 801,954 to 802,217 _03495 PS417_03500: PS417_03500 - type III secretion system protein, at 802,228 to 803,016 _03500 PS417_03505: PS417_03505 - type III secretion system protein, at 803,013 to 804,110 _03505 PS417_03510: PS417_03510 - type III secretion system negative regulatory protein RspV, at 804,111 to 804,449 _03510 PS417_03515: PS417_03515 - type III secretion protein, at 804,461 to 804,664 _03515 PS417_03520: PS417_03520 - secretin, at 804,661 to 806,802 _03520 Position (kb) 803 804 805Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 802.075 kb on + strand, within PS417_03495at 802.076 kb on - strand, within PS417_03495at 802.076 kb on - strand, within PS417_03495at 802.237 kb on + strandat 802.278 kb on + strandat 802.279 kb on - strandat 802.323 kb on + strand, within PS417_03500at 802.323 kb on + strand, within PS417_03500at 802.323 kb on + strand, within PS417_03500at 802.323 kb on + strand, within PS417_03500at 802.324 kb on - strand, within PS417_03500at 802.325 kb on + strand, within PS417_03500at 802.325 kb on + strand, within PS417_03500at 802.325 kb on + strand, within PS417_03500at 802.325 kb on + strand, within PS417_03500at 802.325 kb on + strand, within PS417_03500at 802.325 kb on + strand, within PS417_03500at 802.326 kb on - strand, within PS417_03500at 802.326 kb on - strand, within PS417_03500at 802.326 kb on - strand, within PS417_03500at 802.326 kb on - strand, within PS417_03500at 802.636 kb on - strand, within PS417_03500at 802.678 kb on + strand, within PS417_03500at 802.844 kb on - strand, within PS417_03500at 802.918 kb on + strandat 803.385 kb on - strand, within PS417_03505at 803.385 kb on - strand, within PS417_03505at 803.481 kb on + strand, within PS417_03505at 803.481 kb on + strand, within PS417_03505at 803.482 kb on - strand, within PS417_03505at 803.482 kb on - strand, within PS417_03505at 803.482 kb on - strand, within PS417_03505at 803.488 kb on + strand, within PS417_03505at 803.544 kb on + strand, within PS417_03505at 803.544 kb on + strand, within PS417_03505at 803.544 kb on + strand, within PS417_03505at 803.545 kb on - strand, within PS417_03505at 803.545 kb on - strand, within PS417_03505at 803.545 kb on - strand, within PS417_03505at 803.745 kb on + strand, within PS417_03505at 803.842 kb on - strand, within PS417_03505at 803.855 kb on + strand, within PS417_03505at 803.956 kb on + strand, within PS417_03505at 803.956 kb on + strand, within PS417_03505at 803.956 kb on + strand, within PS417_03505at 803.957 kb on - strand, within PS417_03505at 803.957 kb on - strand, within PS417_03505at 803.957 kb on - strand, within PS417_03505at 803.957 kb on - strand, within PS417_03505at 804.229 kb on + strand, within PS417_03510at 804.230 kb on - strand, within PS417_03510at 804.230 kb on - strand, within PS417_03510at 804.233 kb on + strand, within PS417_03510at 804.233 kb on + strand, within PS417_03510at 804.605 kb on - strand, within PS417_03515at 804.752 kb on - strandat 804.752 kb on - strandat 804.890 kb on + strand, within PS417_03520

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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802,075 + PS417_03495 0.46 -0.7
802,076 - PS417_03495 0.46 -1.1
802,076 - PS417_03495 0.46 +1.3
802,237 + -1.2
802,278 + +0.4
802,279 - -0.4
802,323 + PS417_03500 0.12 +0.7
802,323 + PS417_03500 0.12 -0.2
802,323 + PS417_03500 0.12 +1.0
802,323 + PS417_03500 0.12 -1.0
802,324 - PS417_03500 0.12 +0.3
802,325 + PS417_03500 0.12 -1.8
802,325 + PS417_03500 0.12 +2.0
802,325 + PS417_03500 0.12 -0.7
802,325 + PS417_03500 0.12 +1.2
802,325 + PS417_03500 0.12 +0.9
802,325 + PS417_03500 0.12 -0.4
802,326 - PS417_03500 0.12 -0.3
802,326 - PS417_03500 0.12 -2.6
802,326 - PS417_03500 0.12 +2.6
802,326 - PS417_03500 0.12 -2.1
802,636 - PS417_03500 0.52 +2.6
802,678 + PS417_03500 0.57 +0.5
802,844 - PS417_03500 0.78 -1.2
802,918 + +0.2
803,385 - PS417_03505 0.34 +0.7
803,385 - PS417_03505 0.34 +1.6
803,481 + PS417_03505 0.43 -0.2
803,481 + PS417_03505 0.43 +1.5
803,482 - PS417_03505 0.43 -4.0
803,482 - PS417_03505 0.43 +4.1
803,482 - PS417_03505 0.43 -0.1
803,488 + PS417_03505 0.43 -0.6
803,544 + PS417_03505 0.48 +1.4
803,544 + PS417_03505 0.48 -1.4
803,544 + PS417_03505 0.48 +0.2
803,545 - PS417_03505 0.48 -0.8
803,545 - PS417_03505 0.48 +0.9
803,545 - PS417_03505 0.48 -0.6
803,745 + PS417_03505 0.67 +0.4
803,842 - PS417_03505 0.76 -0.9
803,855 + PS417_03505 0.77 +1.7
803,956 + PS417_03505 0.86 +1.8
803,956 + PS417_03505 0.86 +0.6
803,956 + PS417_03505 0.86 -0.2
803,957 - PS417_03505 0.86 +0.1
803,957 - PS417_03505 0.86 -1.9
803,957 - PS417_03505 0.86 +2.6
803,957 - PS417_03505 0.86 -0.2
804,229 + PS417_03510 0.35 -2.1
804,230 - PS417_03510 0.35 +0.3
804,230 - PS417_03510 0.35 +1.3
804,233 + PS417_03510 0.36 -0.1
804,233 + PS417_03510 0.36 +0.9
804,605 - PS417_03515 0.71 -1.4
804,752 - -2.7
804,752 - -1.4
804,890 + PS417_03520 0.11 -0.5

Or see this region's nucleotide sequence