Strain Fitness in Pseudomonas simiae WCS417 around PS417_03455

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03450 and PS417_03455 are separated by 263 nucleotidesPS417_03455 and PS417_03460 overlap by 4 nucleotides PS417_03450: PS417_03450 - RNA polymerase sigma factor, at 793,158 to 793,709 _03450 PS417_03455: PS417_03455 - type III secretion protein, at 793,973 to 795,037 _03455 PS417_03460: PS417_03460 - type III secretion protein HrpI, at 795,034 to 797,127 _03460 Position (kb) 793 794 795 796Strain fitness (log2 ratio) -2 -1 0 1 2 3at 793.235 kb on + strand, within PS417_03450at 793.294 kb on + strand, within PS417_03450at 793.488 kb on - strand, within PS417_03450at 793.555 kb on + strand, within PS417_03450at 793.727 kb on - strandat 793.762 kb on + strandat 793.856 kb on + strandat 793.856 kb on + strandat 793.856 kb on + strandat 794.321 kb on + strand, within PS417_03455at 794.321 kb on + strand, within PS417_03455at 794.322 kb on - strand, within PS417_03455at 794.817 kb on + strandat 795.181 kb on - strandat 795.181 kb on - strandat 795.218 kb on - strandat 795.218 kb on - strandat 796.000 kb on + strand, within PS417_03460at 796.000 kb on + strand, within PS417_03460at 796.003 kb on + strand, within PS417_03460at 796.003 kb on + strand, within PS417_03460at 796.004 kb on - strand, within PS417_03460

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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793,235 + PS417_03450 0.14 +0.4
793,294 + PS417_03450 0.25 +0.3
793,488 - PS417_03450 0.60 -1.8
793,555 + PS417_03450 0.72 -0.7
793,727 - -1.4
793,762 + +1.3
793,856 + +0.4
793,856 + +0.8
793,856 + -1.2
794,321 + PS417_03455 0.33 -1.1
794,321 + PS417_03455 0.33 +3.0
794,322 - PS417_03455 0.33 +2.5
794,817 + -1.1
795,181 - -1.8
795,181 - -0.8
795,218 - +1.2
795,218 - +0.3
796,000 + PS417_03460 0.46 +1.2
796,000 + PS417_03460 0.46 +0.2
796,003 + PS417_03460 0.46 -0.6
796,003 + PS417_03460 0.46 +0.4
796,004 - PS417_03460 0.46 +0.6

Or see this region's nucleotide sequence