Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01975 and PS417_01980 are separated by 4 nucleotides PS417_01980 and PS417_01985 are separated by 125 nucleotides PS417_01985 and PS417_01990 are separated by 10 nucleotides
PS417_01975: PS417_01975 - pilus assembly protein PilQ, at 438,423 to 439,748
_01975
PS417_01980: PS417_01980 - shikimate kinase, at 439,753 to 440,271
_01980
PS417_01985: PS417_01985 - 3-dehydroquinate synthase, at 440,397 to 441,497
_01985
PS417_01990: PS417_01990 - cell division protein, at 441,508 to 443,079
_01990
Position (kb) 440
441
442 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 439.482 kb on + strand, within PS417_01975 at 439.483 kb on - strand, within PS417_01975 at 439.540 kb on + strand, within PS417_01975 at 439.606 kb on + strand, within PS417_01975 at 439.611 kb on - strand, within PS417_01975 at 439.611 kb on - strand, within PS417_01975 at 439.611 kb on - strand, within PS417_01975 at 439.637 kb on + strand at 439.715 kb on + strand at 441.489 kb on - strand at 441.548 kb on - strand at 441.861 kb on - strand, within PS417_01990 at 441.861 kb on - strand, within PS417_01990 at 441.889 kb on + strand, within PS417_01990 at 441.890 kb on - strand, within PS417_01990 at 441.983 kb on + strand, within PS417_01990 at 441.984 kb on - strand, within PS417_01990 at 441.984 kb on - strand, within PS417_01990 at 441.984 kb on - strand, within PS417_01990 at 442.073 kb on - strand, within PS417_01990 at 442.287 kb on + strand, within PS417_01990 at 442.298 kb on + strand, within PS417_01990
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 439,482 + PS417_01975 0.80 -1.0 439,483 - PS417_01975 0.80 +0.3 439,540 + PS417_01975 0.84 +0.9 439,606 + PS417_01975 0.89 -2.1 439,611 - PS417_01975 0.90 -1.1 439,611 - PS417_01975 0.90 -2.2 439,611 - PS417_01975 0.90 -0.3 439,637 + -0.2 439,715 + +0.3 441,489 - +0.6 441,548 - -2.2 441,861 - PS417_01990 0.22 -0.4 441,861 - PS417_01990 0.22 -3.6 441,889 + PS417_01990 0.24 -1.3 441,890 - PS417_01990 0.24 -1.1 441,983 + PS417_01990 0.30 -0.1 441,984 - PS417_01990 0.30 -0.4 441,984 - PS417_01990 0.30 -0.3 441,984 - PS417_01990 0.30 -1.5 442,073 - PS417_01990 0.36 -0.1 442,287 + PS417_01990 0.50 -1.1 442,298 + PS417_01990 0.50 -2.4
Or see this region's nucleotide sequence