Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19015 and PS417_19020 are separated by 123 nucleotides PS417_19020 and PS417_19025 overlap by 4 nucleotides PS417_19025 and PS417_19030 are separated by 95 nucleotides
PS417_19015: PS417_19015 - LysR family transcriptional regulator, at 4,115,164 to 4,116,060
_19015
PS417_19020: PS417_19020 - dimethylmenaquinone methyltransferase, at 4,116,184 to 4,116,849
_19020
PS417_19025: PS417_19025 - aspartate aminotransferase, at 4,116,846 to 4,118,051
_19025
PS417_19030: PS417_19030 - sodium:dicarboxylate symporter, at 4,118,147 to 4,119,424
_19030
Position (kb) 4116
4117
4118
4119 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4116.069 kb on + strand at 4116.135 kb on - strand at 4116.135 kb on - strand at 4116.394 kb on + strand, within PS417_19020 at 4116.428 kb on + strand, within PS417_19020 at 4116.429 kb on - strand, within PS417_19020 at 4116.429 kb on - strand at 4116.601 kb on + strand, within PS417_19020 at 4116.728 kb on + strand, within PS417_19020 at 4117.038 kb on + strand, within PS417_19025 at 4117.038 kb on + strand, within PS417_19025 at 4117.114 kb on - strand at 4117.161 kb on + strand, within PS417_19025 at 4117.161 kb on + strand, within PS417_19025 at 4117.161 kb on + strand, within PS417_19025 at 4117.162 kb on - strand, within PS417_19025 at 4117.162 kb on - strand, within PS417_19025 at 4117.162 kb on - strand, within PS417_19025 at 4117.162 kb on - strand, within PS417_19025 at 4117.162 kb on - strand, within PS417_19025 at 4117.390 kb on - strand at 4117.426 kb on + strand, within PS417_19025 at 4117.427 kb on - strand, within PS417_19025 at 4117.467 kb on + strand at 4117.569 kb on + strand, within PS417_19025 at 4117.655 kb on + strand, within PS417_19025 at 4117.655 kb on + strand, within PS417_19025 at 4117.701 kb on - strand, within PS417_19025 at 4117.741 kb on - strand, within PS417_19025 at 4117.821 kb on + strand, within PS417_19025 at 4117.821 kb on + strand, within PS417_19025 at 4117.822 kb on - strand, within PS417_19025 at 4117.822 kb on - strand, within PS417_19025 at 4117.822 kb on - strand, within PS417_19025 at 4117.822 kb on - strand, within PS417_19025 at 4117.905 kb on + strand, within PS417_19025 at 4118.103 kb on - strand at 4118.147 kb on - strand at 4118.285 kb on - strand, within PS417_19030 at 4118.843 kb on + strand, within PS417_19030 at 4118.843 kb on + strand, within PS417_19030 at 4118.844 kb on - strand, within PS417_19030 at 4118.844 kb on - strand, within PS417_19030 at 4118.866 kb on - strand at 4119.011 kb on + strand, within PS417_19030 at 4119.012 kb on - strand, within PS417_19030
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 4,116,069 + -0.1 4,116,135 - +2.0 4,116,135 - +0.8 4,116,394 + PS417_19020 0.32 +1.0 4,116,428 + PS417_19020 0.37 +2.2 4,116,429 - PS417_19020 0.37 -1.1 4,116,429 - -0.1 4,116,601 + PS417_19020 0.63 +4.5 4,116,728 + PS417_19020 0.82 +0.0 4,117,038 + PS417_19025 0.16 -0.9 4,117,038 + PS417_19025 0.16 -2.3 4,117,114 - -1.4 4,117,161 + PS417_19025 0.26 -1.4 4,117,161 + PS417_19025 0.26 +0.9 4,117,161 + PS417_19025 0.26 -3.1 4,117,162 - PS417_19025 0.26 -0.1 4,117,162 - PS417_19025 0.26 +0.1 4,117,162 - PS417_19025 0.26 +0.9 4,117,162 - PS417_19025 0.26 +0.2 4,117,162 - PS417_19025 0.26 +1.3 4,117,390 - -1.7 4,117,426 + PS417_19025 0.48 -0.5 4,117,427 - PS417_19025 0.48 +0.5 4,117,467 + -1.4 4,117,569 + PS417_19025 0.60 +0.3 4,117,655 + PS417_19025 0.67 -0.8 4,117,655 + PS417_19025 0.67 +0.1 4,117,701 - PS417_19025 0.71 -1.5 4,117,741 - PS417_19025 0.74 +0.3 4,117,821 + PS417_19025 0.81 -0.9 4,117,821 + PS417_19025 0.81 +0.4 4,117,822 - PS417_19025 0.81 +1.9 4,117,822 - PS417_19025 0.81 -0.3 4,117,822 - PS417_19025 0.81 +1.6 4,117,822 - PS417_19025 0.81 +0.2 4,117,905 + PS417_19025 0.88 -0.4 4,118,103 - -0.3 4,118,147 - +0.6 4,118,285 - PS417_19030 0.11 +1.3 4,118,843 + PS417_19030 0.54 -1.1 4,118,843 + PS417_19030 0.54 +0.5 4,118,844 - PS417_19030 0.55 -0.2 4,118,844 - PS417_19030 0.55 +0.5 4,118,866 - +0.9 4,119,011 + PS417_19030 0.68 -0.5 4,119,012 - PS417_19030 0.68 +0.9
Or see this region's nucleotide sequence