Strain Fitness in Pseudomonas simiae WCS417 around PS417_17565

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17560 and PS417_17565 are separated by 124 nucleotides PS417_17560: PS417_17560 - Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data), at 3,834,802 to 3,836,181 _17560 PS417_17565: PS417_17565 - branched-chain amino acid aminotransferase, at 3,836,306 to 3,837,325 _17565 Position (kb) 3836 3837 3838Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 3835.346 kb on - strand, within PS417_17560at 3835.705 kb on + strand, within PS417_17560at 3835.705 kb on + strand, within PS417_17560at 3835.706 kb on - strand, within PS417_17560at 3835.706 kb on - strand, within PS417_17560at 3836.231 kb on + strandat 3836.231 kb on + strandat 3836.231 kb on + strandat 3836.232 kb on - strandat 3836.232 kb on - strandat 3836.232 kb on - strandat 3836.295 kb on + strandat 3836.296 kb on - strandat 3836.348 kb on + strandat 3836.800 kb on + strand, within PS417_17565at 3836.801 kb on - strand, within PS417_17565at 3836.870 kb on + strand, within PS417_17565at 3837.417 kb on - strandat 3837.479 kb on - strandat 3837.568 kb on - strandat 3837.623 kb on - strandat 3837.726 kb on - strandat 3837.869 kb on + strandat 3837.869 kb on + strandat 3837.870 kb on - strandat 3837.870 kb on - strandat 3838.166 kb on + strandat 3838.287 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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3,835,346 - PS417_17560 0.39 -1.5
3,835,705 + PS417_17560 0.65 -3.9
3,835,705 + PS417_17560 0.65 -1.5
3,835,706 - PS417_17560 0.66 -4.2
3,835,706 - PS417_17560 0.66 -4.2
3,836,231 + -1.3
3,836,231 + -0.2
3,836,231 + -2.6
3,836,232 - -0.8
3,836,232 - -3.5
3,836,232 - -3.9
3,836,295 + -0.2
3,836,296 - -3.4
3,836,348 + -2.5
3,836,800 + PS417_17565 0.48 -5.4
3,836,801 - PS417_17565 0.49 -2.5
3,836,870 + PS417_17565 0.55 -4.1
3,837,417 - -0.4
3,837,479 - -2.6
3,837,568 - +4.7
3,837,623 - +1.5
3,837,726 - +0.6
3,837,869 + +0.4
3,837,869 + -0.9
3,837,870 - -2.3
3,837,870 - +0.4
3,838,166 + -0.8
3,838,287 - -1.4

Or see this region's nucleotide sequence