Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14870 and PS417_14875 overlap by 4 nucleotides PS417_14875 and PS417_14880 are separated by 133 nucleotides PS417_14880 and PS417_14885 are separated by 43 nucleotides PS417_14885 and PS417_14890 overlap by 4 nucleotides
PS417_14870: PS417_14870 - transporter, at 3,248,656 to 3,249,546
_14870
PS417_14875: PS417_14875 - polyisoprenoid-binding protein, at 3,249,543 to 3,250,097
_14875
PS417_14880: PS417_14880 - thioesterase, at 3,250,231 to 3,250,725
_14880
PS417_14885: PS417_14885 - dienelactone hydrolase, at 3,250,769 to 3,251,656
_14885
PS417_14890: PS417_14890 - LysR family transcriptional regulator, at 3,251,653 to 3,252,528
_14890
Position (kb) 3250
3251 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3249.328 kb on + strand, within PS417_14870 at 3249.794 kb on - strand, within PS417_14875 at 3249.968 kb on - strand, within PS417_14875 at 3250.034 kb on - strand, within PS417_14875 at 3250.060 kb on + strand at 3250.061 kb on - strand at 3250.099 kb on - strand at 3250.099 kb on - strand at 3250.099 kb on - strand at 3250.193 kb on + strand at 3250.344 kb on - strand, within PS417_14880 at 3250.932 kb on - strand, within PS417_14885 at 3250.932 kb on - strand, within PS417_14885 at 3250.982 kb on + strand, within PS417_14885 at 3250.991 kb on + strand, within PS417_14885 at 3250.992 kb on - strand, within PS417_14885 at 3251.008 kb on + strand, within PS417_14885 at 3251.008 kb on + strand, within PS417_14885 at 3251.134 kb on + strand, within PS417_14885 at 3251.454 kb on - strand, within PS417_14885 at 3251.496 kb on - strand, within PS417_14885 at 3251.529 kb on - strand, within PS417_14885 at 3251.537 kb on + strand, within PS417_14885 at 3251.537 kb on + strand, within PS417_14885 at 3251.538 kb on - strand, within PS417_14885 at 3251.538 kb on - strand, within PS417_14885 at 3251.539 kb on + strand, within PS417_14885 at 3251.540 kb on - strand, within PS417_14885 at 3251.543 kb on + strand, within PS417_14885 at 3251.544 kb on - strand, within PS417_14885 at 3251.544 kb on - strand, within PS417_14885 at 3251.544 kb on - strand, within PS417_14885 at 3251.588 kb on + strand at 3251.641 kb on + strand at 3251.642 kb on - strand at 3251.645 kb on + strand at 3251.645 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 3,249,328 + PS417_14870 0.75 +1.0 3,249,794 - PS417_14875 0.45 -0.5 3,249,968 - PS417_14875 0.77 +0.9 3,250,034 - PS417_14875 0.88 +1.6 3,250,060 + +0.1 3,250,061 - -0.3 3,250,099 - +2.1 3,250,099 - +0.1 3,250,099 - -0.9 3,250,193 + +0.3 3,250,344 - PS417_14880 0.23 +1.1 3,250,932 - PS417_14885 0.18 -1.9 3,250,932 - PS417_14885 0.18 +1.7 3,250,982 + PS417_14885 0.24 +0.2 3,250,991 + PS417_14885 0.25 +0.3 3,250,992 - PS417_14885 0.25 -0.7 3,251,008 + PS417_14885 0.27 +2.0 3,251,008 + PS417_14885 0.27 +1.4 3,251,134 + PS417_14885 0.41 -0.7 3,251,454 - PS417_14885 0.77 -0.6 3,251,496 - PS417_14885 0.82 +0.2 3,251,529 - PS417_14885 0.86 -1.1 3,251,537 + PS417_14885 0.86 -1.1 3,251,537 + PS417_14885 0.86 -2.1 3,251,538 - PS417_14885 0.87 +0.9 3,251,538 - PS417_14885 0.87 -0.1 3,251,539 + PS417_14885 0.87 -1.4 3,251,540 - PS417_14885 0.87 -1.3 3,251,543 + PS417_14885 0.87 +0.3 3,251,544 - PS417_14885 0.87 -1.8 3,251,544 - PS417_14885 0.87 +0.5 3,251,544 - PS417_14885 0.87 -1.3 3,251,588 + +0.5 3,251,641 + -1.0 3,251,642 - +0.5 3,251,645 + +2.3 3,251,645 + -1.7
Or see this region's nucleotide sequence