Strain Fitness in Pseudomonas simiae WCS417 around PS417_09335

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09330 and PS417_09335 are separated by 144 nucleotidesPS417_09335 and PS417_09340 are separated by 30 nucleotides PS417_09330: PS417_09330 - NAD(P)H-quinone oxidoreductase, at 2,024,997 to 2,025,959 _09330 PS417_09335: PS417_09335 - HAD family hydrolase, at 2,026,104 to 2,026,757 _09335 PS417_09340: PS417_09340 - spermidine/putrescine ABC transporter ATP-binding protein, at 2,026,788 to 2,027,777 _09340 Position (kb) 2026 2027Strain fitness (log2 ratio) -2 -1 0 1 2at 2025.351 kb on + strand, within PS417_09330at 2025.624 kb on + strand, within PS417_09330at 2025.624 kb on + strand, within PS417_09330at 2025.742 kb on + strand, within PS417_09330at 2025.742 kb on + strand, within PS417_09330at 2026.012 kb on + strandat 2026.334 kb on - strand, within PS417_09335at 2026.794 kb on + strandat 2027.068 kb on + strand, within PS417_09340at 2027.068 kb on + strand, within PS417_09340at 2027.069 kb on - strand, within PS417_09340at 2027.094 kb on + strand, within PS417_09340at 2027.094 kb on + strand, within PS417_09340at 2027.095 kb on - strand, within PS417_09340at 2027.113 kb on + strand, within PS417_09340

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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2,025,351 + PS417_09330 0.37 +1.8
2,025,624 + PS417_09330 0.65 +1.0
2,025,624 + PS417_09330 0.65 -0.8
2,025,742 + PS417_09330 0.77 +0.4
2,025,742 + PS417_09330 0.77 -2.6
2,026,012 + +0.1
2,026,334 - PS417_09335 0.35 -1.1
2,026,794 + -1.1
2,027,068 + PS417_09340 0.28 -0.4
2,027,068 + PS417_09340 0.28 -1.3
2,027,069 - PS417_09340 0.28 +2.6
2,027,094 + PS417_09340 0.31 +1.1
2,027,094 + PS417_09340 0.31 -1.4
2,027,095 - PS417_09340 0.31 -1.5
2,027,113 + PS417_09340 0.33 -1.0

Or see this region's nucleotide sequence