Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00665 and PS417_00670 are separated by 74 nucleotides PS417_00670 and PS417_00675 overlap by 4 nucleotides
PS417_00665: PS417_00665 - RND transporter, at 136,301 to 137,746
_00665
PS417_00670: PS417_00670 - RNA polymerase sigma factor, at 137,821 to 138,330
_00670
PS417_00675: PS417_00675 - iron dicitrate transport regulator FecR, at 138,327 to 139,277
_00675
Position (kb) 137
138
139 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 136.848 kb on - strand, within PS417_00665 at 136.867 kb on - strand, within PS417_00665 at 136.867 kb on - strand, within PS417_00665 at 137.000 kb on - strand, within PS417_00665 at 137.433 kb on - strand, within PS417_00665 at 137.433 kb on - strand, within PS417_00665 at 137.433 kb on - strand, within PS417_00665 at 137.487 kb on - strand, within PS417_00665 at 137.570 kb on + strand, within PS417_00665 at 137.571 kb on - strand, within PS417_00665 at 137.687 kb on + strand at 137.688 kb on - strand at 137.864 kb on - strand at 138.004 kb on + strand, within PS417_00670 at 138.070 kb on + strand, within PS417_00670 at 138.071 kb on - strand, within PS417_00670 at 138.204 kb on - strand, within PS417_00670 at 138.280 kb on + strand at 138.280 kb on + strand at 138.280 kb on + strand at 138.280 kb on + strand at 138.280 kb on + strand at 138.281 kb on - strand at 138.281 kb on - strand at 138.281 kb on - strand at 138.616 kb on - strand, within PS417_00675 at 139.232 kb on - strand at 139.232 kb on - strand at 139.323 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 136,848 - PS417_00665 0.38 +0.6 136,867 - PS417_00665 0.39 -2.9 136,867 - PS417_00665 0.39 +2.6 137,000 - PS417_00665 0.48 -3.2 137,433 - PS417_00665 0.78 -0.2 137,433 - PS417_00665 0.78 +1.7 137,433 - PS417_00665 0.78 -0.3 137,487 - PS417_00665 0.82 -0.5 137,570 + PS417_00665 0.88 +1.0 137,571 - PS417_00665 0.88 +0.2 137,687 + +0.7 137,688 - +0.0 137,864 - +0.0 138,004 + PS417_00670 0.36 -0.6 138,070 + PS417_00670 0.49 +0.0 138,071 - PS417_00670 0.49 -2.0 138,204 - PS417_00670 0.75 -2.0 138,280 + -2.7 138,280 + -1.6 138,280 + +0.3 138,280 + +0.4 138,280 + +0.7 138,281 - +0.9 138,281 - -2.4 138,281 - +0.1 138,616 - PS417_00675 0.30 +0.1 139,232 - +0.9 139,232 - -2.1 139,323 + -2.3
Or see this region's nucleotide sequence