Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3281

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3280 and Echvi_3281 are separated by 648 nucleotidesEchvi_3281 and Echvi_3282 are separated by 672 nucleotides Echvi_3280: Echvi_3280 - hypothetical protein, at 3,883,717 to 3,883,854 _3280 Echvi_3281: Echvi_3281 - hypothetical protein, at 3,884,503 to 3,884,718 _3281 Echvi_3282: Echvi_3282 - hypothetical protein, at 3,885,391 to 3,885,606 _3282 Position (kb) 3884 3885Strain fitness (log2 ratio) -2 -1 0 1 2at 3883.522 kb on + strandat 3883.694 kb on - strandat 3883.694 kb on - strandat 3883.694 kb on - strandat 3884.009 kb on - strandat 3884.036 kb on - strandat 3884.036 kb on - strandat 3884.768 kb on + strandat 3884.827 kb on - strandat 3884.897 kb on + strandat 3884.898 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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3,883,522 + +0.8
3,883,694 - -0.6
3,883,694 - -0.9
3,883,694 - +0.1
3,884,009 - +0.2
3,884,036 - -2.2
3,884,036 - +2.1
3,884,768 + -0.8
3,884,827 - -0.1
3,884,897 + +0.2
3,884,898 - +0.5

Or see this region's nucleotide sequence