Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0701

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0700 and Echvi_0701 are separated by 13 nucleotidesEchvi_0701 and Echvi_0702 are separated by 464 nucleotides Echvi_0700: Echvi_0700 - Predicted aminopeptidases, at 791,960 to 792,922 _0700 Echvi_0701: Echvi_0701 - cysteinyl-tRNA synthetase, at 792,936 to 794,429 _0701 Echvi_0702: Echvi_0702 - hypothetical protein, at 794,894 to 796,072 _0702 Position (kb) 792 793 794 795Strain fitness (log2 ratio) -2 -1 0 1 2 3at 791.953 kb on + strandat 792.932 kb on + strandat 792.946 kb on + strandat 792.947 kb on - strandat 794.445 kb on - strandat 794.468 kb on - strandat 794.484 kb on + strandat 794.485 kb on - strandat 794.491 kb on + strandat 794.531 kb on + strandat 794.531 kb on + strandat 794.531 kb on + strandat 794.564 kb on - strandat 794.566 kb on - strandat 794.588 kb on - strandat 794.604 kb on + strandat 794.605 kb on - strandat 794.731 kb on - strandat 794.782 kb on + strandat 794.791 kb on + strandat 794.798 kb on + strandat 794.865 kb on + strandat 794.866 kb on - strandat 794.893 kb on + strandat 794.893 kb on + strandat 794.894 kb on - strandat 794.894 kb on - strandat 794.901 kb on + strandat 794.902 kb on - strandat 794.907 kb on + strandat 794.907 kb on + strandat 794.907 kb on + strandat 794.907 kb on + strandat 794.908 kb on - strandat 794.908 kb on - strandat 794.908 kb on - strandat 794.928 kb on - strandat 794.969 kb on - strandat 794.978 kb on + strandat 795.037 kb on - strand, within Echvi_0702at 795.067 kb on + strand, within Echvi_0702at 795.068 kb on - strand, within Echvi_0702at 795.068 kb on - strand, within Echvi_0702at 795.144 kb on - strand, within Echvi_0702at 795.156 kb on - strand, within Echvi_0702at 795.156 kb on - strand, within Echvi_0702at 795.174 kb on - strand, within Echvi_0702at 795.200 kb on + strand, within Echvi_0702at 795.201 kb on - strand, within Echvi_0702at 795.201 kb on - strand, within Echvi_0702at 795.201 kb on - strand, within Echvi_0702at 795.203 kb on + strand, within Echvi_0702at 795.203 kb on + strand, within Echvi_0702at 795.204 kb on - strand, within Echvi_0702at 795.221 kb on + strand, within Echvi_0702at 795.221 kb on + strand, within Echvi_0702at 795.222 kb on - strand, within Echvi_0702at 795.222 kb on - strand, within Echvi_0702at 795.222 kb on - strand, within Echvi_0702at 795.287 kb on + strand, within Echvi_0702at 795.287 kb on + strand, within Echvi_0702at 795.287 kb on + strand, within Echvi_0702at 795.287 kb on + strand, within Echvi_0702at 795.287 kb on + strand, within Echvi_0702at 795.288 kb on - strand, within Echvi_0702at 795.288 kb on - strand, within Echvi_0702at 795.288 kb on - strand, within Echvi_0702at 795.288 kb on - strand, within Echvi_0702at 795.288 kb on - strand, within Echvi_0702at 795.288 kb on - strand, within Echvi_0702at 795.291 kb on + strand, within Echvi_0702at 795.291 kb on + strand, within Echvi_0702at 795.291 kb on + strand, within Echvi_0702at 795.291 kb on + strand, within Echvi_0702at 795.292 kb on - strand, within Echvi_0702at 795.292 kb on - strand, within Echvi_0702at 795.344 kb on + strand, within Echvi_0702at 795.345 kb on - strand, within Echvi_0702at 795.345 kb on - strand, within Echvi_0702at 795.392 kb on + strand, within Echvi_0702at 795.393 kb on - strand, within Echvi_0702at 795.395 kb on - strand, within Echvi_0702at 795.421 kb on + strand, within Echvi_0702at 795.421 kb on + strand, within Echvi_0702at 795.421 kb on + strand, within Echvi_0702at 795.422 kb on - strand, within Echvi_0702at 795.422 kb on - strand, within Echvi_0702

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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791,953 + +3.6
792,932 + +0.5
792,946 + -0.2
792,947 - +1.7
794,445 - -0.8
794,468 - +1.7
794,484 + -1.5
794,485 - -0.4
794,491 + +0.7
794,531 + +0.4
794,531 + -0.8
794,531 + +0.6
794,564 - -2.7
794,566 - +0.9
794,588 - +0.8
794,604 + +0.6
794,605 - +2.2
794,731 - +0.2
794,782 + +0.0
794,791 + -0.3
794,798 + -1.0
794,865 + +0.5
794,866 - +0.2
794,893 + -0.5
794,893 + +0.1
794,894 - +2.4
794,894 - +0.6
794,901 + +1.4
794,902 - -2.3
794,907 + +0.5
794,907 + -0.3
794,907 + -1.0
794,907 + -0.1
794,908 - +0.3
794,908 - +1.7
794,908 - -1.8
794,928 - -2.1
794,969 - -1.0
794,978 + -2.6
795,037 - Echvi_0702 0.12 +0.5
795,067 + Echvi_0702 0.15 -0.8
795,068 - Echvi_0702 0.15 -0.3
795,068 - Echvi_0702 0.15 -0.0
795,144 - Echvi_0702 0.21 -1.1
795,156 - Echvi_0702 0.22 -1.1
795,156 - Echvi_0702 0.22 +0.5
795,174 - Echvi_0702 0.24 +1.7
795,200 + Echvi_0702 0.26 +0.0
795,201 - Echvi_0702 0.26 +1.0
795,201 - Echvi_0702 0.26 +0.6
795,201 - Echvi_0702 0.26 +1.2
795,203 + Echvi_0702 0.26 +0.4
795,203 + Echvi_0702 0.26 -0.6
795,204 - Echvi_0702 0.26 +0.2
795,221 + Echvi_0702 0.28 +1.2
795,221 + Echvi_0702 0.28 +1.1
795,222 - Echvi_0702 0.28 -1.4
795,222 - Echvi_0702 0.28 +0.2
795,222 - Echvi_0702 0.28 -0.5
795,287 + Echvi_0702 0.33 +0.5
795,287 + Echvi_0702 0.33 -2.2
795,287 + Echvi_0702 0.33 -1.9
795,287 + Echvi_0702 0.33 -0.0
795,287 + Echvi_0702 0.33 -1.3
795,288 - Echvi_0702 0.33 +0.9
795,288 - Echvi_0702 0.33 +1.0
795,288 - Echvi_0702 0.33 -1.8
795,288 - Echvi_0702 0.33 +0.1
795,288 - Echvi_0702 0.33 +1.3
795,288 - Echvi_0702 0.33 -2.4
795,291 + Echvi_0702 0.34 +0.0
795,291 + Echvi_0702 0.34 +0.8
795,291 + Echvi_0702 0.34 +0.9
795,291 + Echvi_0702 0.34 -0.1
795,292 - Echvi_0702 0.34 +0.9
795,292 - Echvi_0702 0.34 -1.9
795,344 + Echvi_0702 0.38 -0.5
795,345 - Echvi_0702 0.38 -1.1
795,345 - Echvi_0702 0.38 +0.8
795,392 + Echvi_0702 0.42 +0.6
795,393 - Echvi_0702 0.42 +0.3
795,395 - Echvi_0702 0.42 -0.4
795,421 + Echvi_0702 0.45 -0.5
795,421 + Echvi_0702 0.45 -0.3
795,421 + Echvi_0702 0.45 +1.0
795,422 - Echvi_0702 0.45 -0.5
795,422 - Echvi_0702 0.45 +0.2

Or see this region's nucleotide sequence