Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0517

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0516 and Echvi_0517 are separated by 43 nucleotidesEchvi_0517 and Echvi_0518 are separated by 99 nucleotides Echvi_0516: Echvi_0516 - Alpha-L-arabinofuranosidase, at 577,516 to 579,066 _0516 Echvi_0517: Echvi_0517 - Glycoside hydrolase 97., at 579,110 to 581,041 _0517 Echvi_0518: Echvi_0518 - Uncharacterized protein conserved in bacteria, at 581,141 to 583,495 _0518 Position (kb) 579 580 581 582Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 578.119 kb on - strand, within Echvi_0516at 578.144 kb on + strand, within Echvi_0516at 578.144 kb on + strand, within Echvi_0516at 578.144 kb on + strand, within Echvi_0516at 578.145 kb on - strand, within Echvi_0516at 578.145 kb on - strand, within Echvi_0516at 578.274 kb on + strand, within Echvi_0516at 578.275 kb on - strand, within Echvi_0516at 578.276 kb on + strand, within Echvi_0516at 578.276 kb on + strand, within Echvi_0516at 578.276 kb on + strand, within Echvi_0516at 578.277 kb on - strand, within Echvi_0516at 578.277 kb on - strand, within Echvi_0516at 578.279 kb on + strand, within Echvi_0516at 578.279 kb on + strand, within Echvi_0516at 578.279 kb on + strand, within Echvi_0516at 578.280 kb on - strand, within Echvi_0516at 578.418 kb on - strand, within Echvi_0516at 578.418 kb on - strand, within Echvi_0516at 578.418 kb on - strand, within Echvi_0516at 578.438 kb on + strand, within Echvi_0516at 578.439 kb on - strand, within Echvi_0516at 578.441 kb on + strand, within Echvi_0516at 578.495 kb on + strand, within Echvi_0516at 578.548 kb on - strand, within Echvi_0516at 578.554 kb on + strand, within Echvi_0516at 578.555 kb on - strand, within Echvi_0516at 578.571 kb on + strand, within Echvi_0516at 578.572 kb on - strand, within Echvi_0516at 578.573 kb on + strand, within Echvi_0516at 578.574 kb on - strand, within Echvi_0516at 578.574 kb on - strand, within Echvi_0516at 578.574 kb on - strand, within Echvi_0516at 578.626 kb on - strandat 578.628 kb on + strand, within Echvi_0516at 578.628 kb on + strand, within Echvi_0516at 578.628 kb on + strand, within Echvi_0516at 578.630 kb on + strand, within Echvi_0516at 578.630 kb on + strand, within Echvi_0516at 578.630 kb on + strand, within Echvi_0516at 578.653 kb on + strand, within Echvi_0516at 578.849 kb on + strand, within Echvi_0516at 578.900 kb on + strand, within Echvi_0516at 578.900 kb on + strand, within Echvi_0516at 578.901 kb on - strand, within Echvi_0516at 578.902 kb on + strand, within Echvi_0516at 578.902 kb on + strand, within Echvi_0516at 578.902 kb on + strand, within Echvi_0516at 578.902 kb on + strand, within Echvi_0516at 578.902 kb on + strand, within Echvi_0516at 578.902 kb on + strand, within Echvi_0516at 578.902 kb on + strand, within Echvi_0516at 578.902 kb on + strand, within Echvi_0516at 578.902 kb on + strand, within Echvi_0516at 578.903 kb on - strand, within Echvi_0516at 578.903 kb on - strand, within Echvi_0516at 578.903 kb on - strand, within Echvi_0516at 578.903 kb on - strand, within Echvi_0516at 578.903 kb on - strand, within Echvi_0516at 578.903 kb on - strand, within Echvi_0516at 578.904 kb on + strand, within Echvi_0516at 578.905 kb on - strand, within Echvi_0516at 578.941 kb on - strandat 579.007 kb on - strandat 579.025 kb on + strandat 579.049 kb on + strandat 579.050 kb on - strandat 579.155 kb on + strandat 579.155 kb on + strandat 579.205 kb on + strandat 579.235 kb on + strandat 579.309 kb on + strand, within Echvi_0517at 579.480 kb on + strand, within Echvi_0517at 579.480 kb on + strand, within Echvi_0517at 579.481 kb on - strand, within Echvi_0517at 579.482 kb on + strand, within Echvi_0517at 579.482 kb on + strand, within Echvi_0517at 579.483 kb on - strand, within Echvi_0517at 579.483 kb on - strand, within Echvi_0517at 579.485 kb on + strand, within Echvi_0517at 579.485 kb on + strand, within Echvi_0517at 579.560 kb on - strand, within Echvi_0517at 579.666 kb on - strand, within Echvi_0517at 579.716 kb on + strand, within Echvi_0517at 579.772 kb on + strand, within Echvi_0517at 579.772 kb on + strand, within Echvi_0517at 579.772 kb on + strand, within Echvi_0517at 579.772 kb on + strand, within Echvi_0517at 579.772 kb on + strand, within Echvi_0517at 579.772 kb on + strand, within Echvi_0517at 579.772 kb on + strand, within Echvi_0517at 579.773 kb on - strand, within Echvi_0517at 579.773 kb on - strandat 579.773 kb on - strand, within Echvi_0517at 579.773 kb on - strand, within Echvi_0517at 579.859 kb on + strand, within Echvi_0517at 579.943 kb on - strand, within Echvi_0517at 579.995 kb on + strand, within Echvi_0517at 580.095 kb on + strand, within Echvi_0517at 580.095 kb on + strand, within Echvi_0517at 580.095 kb on + strand, within Echvi_0517at 580.096 kb on - strand, within Echvi_0517at 580.096 kb on - strand, within Echvi_0517at 580.219 kb on + strand, within Echvi_0517at 580.534 kb on + strand, within Echvi_0517at 580.538 kb on + strand, within Echvi_0517at 580.612 kb on + strand, within Echvi_0517at 580.612 kb on + strand, within Echvi_0517at 580.613 kb on - strand, within Echvi_0517at 580.613 kb on - strand, within Echvi_0517at 580.616 kb on + strand, within Echvi_0517at 580.616 kb on + strand, within Echvi_0517at 580.616 kb on + strand, within Echvi_0517at 580.617 kb on - strand, within Echvi_0517at 580.617 kb on - strand, within Echvi_0517at 580.617 kb on - strand, within Echvi_0517at 580.740 kb on + strand, within Echvi_0517at 580.740 kb on + strand, within Echvi_0517at 580.776 kb on + strand, within Echvi_0517at 580.777 kb on - strand, within Echvi_0517at 580.777 kb on - strand, within Echvi_0517at 580.833 kb on - strand, within Echvi_0517at 580.874 kb on + strandat 580.874 kb on + strandat 580.874 kb on + strandat 580.875 kb on - strandat 580.875 kb on - strandat 580.898 kb on - strandat 581.009 kb on - strandat 581.009 kb on - strandat 581.031 kb on - strandat 581.107 kb on + strandat 581.142 kb on + strandat 581.142 kb on + strandat 581.400 kb on + strand, within Echvi_0518at 581.458 kb on + strand, within Echvi_0518at 581.637 kb on - strand, within Echvi_0518at 581.643 kb on + strand, within Echvi_0518at 581.643 kb on + strand, within Echvi_0518at 581.644 kb on - strand, within Echvi_0518at 581.681 kb on + strand, within Echvi_0518at 581.681 kb on + strand, within Echvi_0518at 581.974 kb on + strand, within Echvi_0518

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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578,119 - Echvi_0516 0.39 -0.1
578,144 + Echvi_0516 0.40 +1.1
578,144 + Echvi_0516 0.40 -0.6
578,144 + Echvi_0516 0.40 +1.0
578,145 - Echvi_0516 0.41 +2.0
578,145 - Echvi_0516 0.41 -0.8
578,274 + Echvi_0516 0.49 -1.7
578,275 - Echvi_0516 0.49 -0.1
578,276 + Echvi_0516 0.49 +1.5
578,276 + Echvi_0516 0.49 +0.5
578,276 + Echvi_0516 0.49 -0.1
578,277 - Echvi_0516 0.49 +3.4
578,277 - Echvi_0516 0.49 -2.0
578,279 + Echvi_0516 0.49 +0.3
578,279 + Echvi_0516 0.49 +1.4
578,279 + Echvi_0516 0.49 +1.4
578,280 - Echvi_0516 0.49 +2.3
578,418 - Echvi_0516 0.58 +0.2
578,418 - Echvi_0516 0.58 -2.7
578,418 - Echvi_0516 0.58 +0.0
578,438 + Echvi_0516 0.59 -0.4
578,439 - Echvi_0516 0.60 +1.6
578,441 + Echvi_0516 0.60 -0.6
578,495 + Echvi_0516 0.63 -0.8
578,548 - Echvi_0516 0.67 +2.0
578,554 + Echvi_0516 0.67 +0.2
578,555 - Echvi_0516 0.67 -0.0
578,571 + Echvi_0516 0.68 -0.2
578,572 - Echvi_0516 0.68 -0.9
578,573 + Echvi_0516 0.68 +1.6
578,574 - Echvi_0516 0.68 +1.5
578,574 - Echvi_0516 0.68 +3.0
578,574 - Echvi_0516 0.68 -1.8
578,626 - +1.0
578,628 + Echvi_0516 0.72 -1.4
578,628 + Echvi_0516 0.72 -2.5
578,628 + Echvi_0516 0.72 +0.7
578,630 + Echvi_0516 0.72 +0.8
578,630 + Echvi_0516 0.72 +0.1
578,630 + Echvi_0516 0.72 +0.2
578,653 + Echvi_0516 0.73 -1.3
578,849 + Echvi_0516 0.86 +0.5
578,900 + Echvi_0516 0.89 +0.6
578,900 + Echvi_0516 0.89 -0.6
578,901 - Echvi_0516 0.89 -0.3
578,902 + Echvi_0516 0.89 +0.0
578,902 + Echvi_0516 0.89 +0.2
578,902 + Echvi_0516 0.89 +0.2
578,902 + Echvi_0516 0.89 -0.9
578,902 + Echvi_0516 0.89 -1.7
578,902 + Echvi_0516 0.89 +0.9
578,902 + Echvi_0516 0.89 +1.4
578,902 + Echvi_0516 0.89 -0.1
578,902 + Echvi_0516 0.89 -0.3
578,903 - Echvi_0516 0.89 -2.1
578,903 - Echvi_0516 0.89 -0.0
578,903 - Echvi_0516 0.89 +2.0
578,903 - Echvi_0516 0.89 +4.3
578,903 - Echvi_0516 0.89 -0.5
578,903 - Echvi_0516 0.89 -1.7
578,904 + Echvi_0516 0.89 +0.2
578,905 - Echvi_0516 0.90 +1.0
578,941 - -0.8
579,007 - +0.8
579,025 + -1.2
579,049 + -1.3
579,050 - -0.7
579,155 + -0.3
579,155 + -1.5
579,205 + +2.1
579,235 + -0.5
579,309 + Echvi_0517 0.10 +1.6
579,480 + Echvi_0517 0.19 -1.7
579,480 + Echvi_0517 0.19 -1.0
579,481 - Echvi_0517 0.19 +1.4
579,482 + Echvi_0517 0.19 +0.1
579,482 + Echvi_0517 0.19 +0.8
579,483 - Echvi_0517 0.19 +3.1
579,483 - Echvi_0517 0.19 -2.0
579,485 + Echvi_0517 0.19 -1.8
579,485 + Echvi_0517 0.19 +0.4
579,560 - Echvi_0517 0.23 -1.2
579,666 - Echvi_0517 0.29 +0.9
579,716 + Echvi_0517 0.31 -0.0
579,772 + Echvi_0517 0.34 +1.6
579,772 + Echvi_0517 0.34 -0.8
579,772 + Echvi_0517 0.34 -0.3
579,772 + Echvi_0517 0.34 -0.0
579,772 + Echvi_0517 0.34 +1.6
579,772 + Echvi_0517 0.34 -1.0
579,772 + Echvi_0517 0.34 +0.1
579,773 - Echvi_0517 0.34 -2.1
579,773 - +1.0
579,773 - Echvi_0517 0.34 +1.0
579,773 - Echvi_0517 0.34 -0.0
579,859 + Echvi_0517 0.39 +0.9
579,943 - Echvi_0517 0.43 +1.7
579,995 + Echvi_0517 0.46 -0.8
580,095 + Echvi_0517 0.51 +2.0
580,095 + Echvi_0517 0.51 +1.0
580,095 + Echvi_0517 0.51 -1.0
580,096 - Echvi_0517 0.51 -0.3
580,096 - Echvi_0517 0.51 +4.0
580,219 + Echvi_0517 0.57 -1.6
580,534 + Echvi_0517 0.74 +0.7
580,538 + Echvi_0517 0.74 -1.3
580,612 + Echvi_0517 0.78 -0.0
580,612 + Echvi_0517 0.78 -0.0
580,613 - Echvi_0517 0.78 -1.6
580,613 - Echvi_0517 0.78 -0.7
580,616 + Echvi_0517 0.78 -1.5
580,616 + Echvi_0517 0.78 -0.3
580,616 + Echvi_0517 0.78 -0.8
580,617 - Echvi_0517 0.78 +0.6
580,617 - Echvi_0517 0.78 -1.5
580,617 - Echvi_0517 0.78 -0.8
580,740 + Echvi_0517 0.84 +0.0
580,740 + Echvi_0517 0.84 +0.2
580,776 + Echvi_0517 0.86 -2.5
580,777 - Echvi_0517 0.86 +1.5
580,777 - Echvi_0517 0.86 -0.6
580,833 - Echvi_0517 0.89 -1.3
580,874 + -1.3
580,874 + +2.5
580,874 + +0.2
580,875 - +1.3
580,875 - -1.2
580,898 - +0.6
581,009 - -0.2
581,009 - -0.6
581,031 - -0.3
581,107 + -1.3
581,142 + +1.7
581,142 + +0.4
581,400 + Echvi_0518 0.11 -0.5
581,458 + Echvi_0518 0.13 +0.2
581,637 - Echvi_0518 0.21 +2.0
581,643 + Echvi_0518 0.21 +1.5
581,643 + Echvi_0518 0.21 +1.2
581,644 - Echvi_0518 0.21 -1.9
581,681 + Echvi_0518 0.23 -0.1
581,681 + Echvi_0518 0.23 -0.3
581,974 + Echvi_0518 0.35 +0.7

Or see this region's nucleotide sequence