Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0465

Experiment: D-Galactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0464 and Echvi_0465 are separated by 333 nucleotidesEchvi_0465 and Echvi_0466 overlap by 17 nucleotidesEchvi_0466 and Echvi_0467 are separated by 112 nucleotides Echvi_0464: Echvi_0464 - Protein of unknown function (DUF2726)., at 508,718 to 509,575 _0464 Echvi_0465: Echvi_0465 - hypothetical protein, at 509,909 to 511,240 _0465 Echvi_0466: Echvi_0466 - hypothetical protein, at 511,224 to 511,928 _0466 Echvi_0467: Echvi_0467 - hypothetical protein, at 512,041 to 512,457 _0467 Position (kb) 509 510 511 512Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 508.955 kb on + strand, within Echvi_0464at 508.995 kb on - strand, within Echvi_0464at 508.995 kb on - strand, within Echvi_0464at 508.995 kb on - strand, within Echvi_0464at 508.995 kb on - strand, within Echvi_0464at 509.026 kb on + strand, within Echvi_0464at 509.026 kb on + strand, within Echvi_0464at 509.026 kb on + strand, within Echvi_0464at 509.026 kb on + strand, within Echvi_0464at 509.027 kb on - strand, within Echvi_0464at 509.069 kb on + strand, within Echvi_0464at 509.078 kb on + strand, within Echvi_0464at 509.140 kb on - strand, within Echvi_0464at 509.144 kb on + strand, within Echvi_0464at 509.145 kb on - strand, within Echvi_0464at 509.195 kb on - strand, within Echvi_0464at 509.221 kb on - strand, within Echvi_0464at 509.225 kb on + strand, within Echvi_0464at 509.243 kb on + strand, within Echvi_0464at 509.244 kb on - strand, within Echvi_0464at 509.259 kb on + strand, within Echvi_0464at 509.263 kb on - strand, within Echvi_0464at 509.271 kb on + strand, within Echvi_0464at 509.271 kb on + strand, within Echvi_0464at 509.271 kb on + strand, within Echvi_0464at 509.272 kb on - strand, within Echvi_0464at 509.272 kb on - strand, within Echvi_0464at 509.275 kb on + strand, within Echvi_0464at 509.275 kb on + strand, within Echvi_0464at 509.275 kb on + strand, within Echvi_0464at 509.275 kb on + strand, within Echvi_0464at 509.276 kb on - strand, within Echvi_0464at 509.366 kb on + strand, within Echvi_0464at 509.422 kb on + strand, within Echvi_0464at 509.429 kb on + strand, within Echvi_0464at 509.434 kb on + strand, within Echvi_0464at 509.434 kb on + strand, within Echvi_0464at 509.450 kb on - strand, within Echvi_0464at 509.489 kb on - strand, within Echvi_0464at 509.503 kb on - strandat 509.506 kb on - strandat 509.506 kb on - strandat 509.554 kb on - strandat 509.554 kb on - strandat 509.582 kb on - strandat 509.587 kb on + strandat 509.624 kb on + strandat 509.624 kb on + strandat 509.632 kb on + strandat 509.644 kb on + strandat 509.675 kb on + strandat 509.688 kb on + strandat 509.688 kb on + strandat 509.713 kb on + strandat 509.960 kb on - strandat 510.008 kb on + strandat 510.011 kb on - strandat 510.032 kb on + strandat 510.033 kb on - strandat 510.033 kb on - strandat 510.065 kb on + strand, within Echvi_0465at 510.066 kb on - strand, within Echvi_0465at 510.109 kb on - strand, within Echvi_0465at 510.133 kb on + strand, within Echvi_0465at 510.134 kb on - strand, within Echvi_0465at 510.185 kb on - strand, within Echvi_0465at 510.185 kb on - strand, within Echvi_0465at 510.206 kb on - strand, within Echvi_0465at 510.257 kb on - strand, within Echvi_0465at 510.257 kb on - strand, within Echvi_0465at 510.257 kb on - strand, within Echvi_0465at 510.257 kb on - strand, within Echvi_0465at 510.257 kb on - strand, within Echvi_0465at 510.306 kb on - strand, within Echvi_0465at 510.383 kb on - strand, within Echvi_0465at 510.436 kb on - strand, within Echvi_0465at 510.436 kb on - strand, within Echvi_0465at 510.464 kb on - strand, within Echvi_0465at 510.464 kb on - strand, within Echvi_0465at 510.545 kb on - strand, within Echvi_0465at 510.550 kb on - strand, within Echvi_0465at 510.554 kb on - strand, within Echvi_0465at 510.613 kb on - strand, within Echvi_0465at 510.640 kb on - strand, within Echvi_0465at 510.752 kb on - strand, within Echvi_0465at 510.759 kb on - strand, within Echvi_0465at 510.879 kb on - strand, within Echvi_0465at 510.879 kb on - strand, within Echvi_0465at 510.879 kb on - strand, within Echvi_0465at 510.879 kb on - strand, within Echvi_0465at 510.995 kb on - strand, within Echvi_0465at 510.995 kb on - strand, within Echvi_0465at 511.007 kb on - strand, within Echvi_0465at 511.007 kb on - strand, within Echvi_0465at 511.007 kb on - strand, within Echvi_0465at 511.084 kb on - strand, within Echvi_0465at 511.086 kb on - strand, within Echvi_0465at 511.086 kb on - strand, within Echvi_0465at 511.112 kb on - strandat 511.112 kb on - strandat 511.112 kb on - strandat 511.146 kb on - strandat 511.146 kb on - strandat 511.161 kb on - strandat 511.161 kb on - strandat 511.176 kb on - strandat 511.176 kb on - strandat 511.199 kb on - strandat 511.295 kb on + strand, within Echvi_0466at 511.310 kb on + strand, within Echvi_0466at 511.311 kb on - strand, within Echvi_0466at 511.311 kb on - strand, within Echvi_0466at 511.311 kb on - strand, within Echvi_0466at 511.349 kb on + strand, within Echvi_0466at 511.350 kb on - strand, within Echvi_0466at 511.354 kb on + strand, within Echvi_0466at 511.354 kb on + strand, within Echvi_0466at 511.354 kb on + strand, within Echvi_0466at 511.355 kb on - strand, within Echvi_0466at 511.355 kb on - strand, within Echvi_0466at 511.358 kb on - strand, within Echvi_0466at 511.358 kb on - strand, within Echvi_0466at 511.358 kb on - strand, within Echvi_0466at 511.361 kb on - strand, within Echvi_0466at 511.407 kb on - strand, within Echvi_0466at 511.412 kb on - strand, within Echvi_0466at 511.447 kb on - strand, within Echvi_0466at 511.447 kb on - strand, within Echvi_0466at 511.451 kb on + strand, within Echvi_0466at 511.451 kb on + strand, within Echvi_0466at 511.451 kb on + strand, within Echvi_0466at 511.452 kb on - strand, within Echvi_0466at 511.465 kb on + strand, within Echvi_0466at 511.511 kb on - strand, within Echvi_0466at 511.511 kb on - strand, within Echvi_0466at 511.553 kb on + strand, within Echvi_0466at 511.554 kb on - strand, within Echvi_0466at 511.677 kb on + strand, within Echvi_0466at 511.677 kb on + strand, within Echvi_0466at 511.677 kb on + strand, within Echvi_0466at 511.677 kb on + strand, within Echvi_0466at 511.678 kb on - strand, within Echvi_0466at 511.723 kb on - strand, within Echvi_0466at 511.723 kb on - strand, within Echvi_0466at 511.723 kb on - strand, within Echvi_0466at 511.747 kb on + strand, within Echvi_0466at 511.797 kb on - strand, within Echvi_0466at 511.803 kb on - strand, within Echvi_0466at 511.803 kb on - strand, within Echvi_0466at 511.913 kb on - strandat 511.913 kb on - strandat 511.926 kb on + strandat 511.927 kb on - strandat 511.927 kb on - strandat 511.940 kb on + strandat 511.940 kb on + strandat 511.983 kb on + strandat 511.983 kb on + strandat 511.983 kb on + strandat 511.983 kb on + strandat 511.983 kb on + strandat 511.983 kb on + strandat 511.983 kb on + strandat 511.984 kb on - strandat 511.984 kb on - strandat 511.984 kb on - strandat 511.984 kb on - strandat 511.984 kb on - strandat 511.984 kb on - strandat 511.987 kb on + strandat 511.991 kb on + strandat 511.991 kb on + strandat 511.991 kb on + strandat 512.011 kb on + strandat 512.038 kb on + strandat 512.070 kb on + strandat 512.079 kb on + strandat 512.089 kb on - strand, within Echvi_0467at 512.124 kb on + strand, within Echvi_0467at 512.179 kb on - strand, within Echvi_0467at 512.179 kb on - strand, within Echvi_0467at 512.182 kb on - strand, within Echvi_0467at 512.182 kb on - strand, within Echvi_0467

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
remove
508,955 + Echvi_0464 0.28 -0.1
508,995 - Echvi_0464 0.32 +0.2
508,995 - Echvi_0464 0.32 +0.4
508,995 - Echvi_0464 0.32 +0.9
508,995 - Echvi_0464 0.32 +0.5
509,026 + Echvi_0464 0.36 -0.3
509,026 + Echvi_0464 0.36 -1.3
509,026 + Echvi_0464 0.36 -1.2
509,026 + Echvi_0464 0.36 +1.8
509,027 - Echvi_0464 0.36 -0.5
509,069 + Echvi_0464 0.41 +0.9
509,078 + Echvi_0464 0.42 -2.9
509,140 - Echvi_0464 0.49 +0.6
509,144 + Echvi_0464 0.50 -0.1
509,145 - Echvi_0464 0.50 +2.3
509,195 - Echvi_0464 0.56 -0.7
509,221 - Echvi_0464 0.59 -1.2
509,225 + Echvi_0464 0.59 -0.1
509,243 + Echvi_0464 0.61 -1.6
509,244 - Echvi_0464 0.61 -1.4
509,259 + Echvi_0464 0.63 -0.7
509,263 - Echvi_0464 0.64 -1.3
509,271 + Echvi_0464 0.64 -2.7
509,271 + Echvi_0464 0.64 -0.1
509,271 + Echvi_0464 0.64 +0.9
509,272 - Echvi_0464 0.65 +0.7
509,272 - Echvi_0464 0.65 -1.1
509,275 + Echvi_0464 0.65 +0.4
509,275 + Echvi_0464 0.65 +0.1
509,275 + Echvi_0464 0.65 +2.6
509,275 + Echvi_0464 0.65 -0.7
509,276 - Echvi_0464 0.65 -0.3
509,366 + Echvi_0464 0.76 -2.1
509,422 + Echvi_0464 0.82 +1.0
509,429 + Echvi_0464 0.83 -1.0
509,434 + Echvi_0464 0.83 +0.6
509,434 + Echvi_0464 0.83 +0.7
509,450 - Echvi_0464 0.85 -1.0
509,489 - Echvi_0464 0.90 -0.5
509,503 - -0.9
509,506 - +0.3
509,506 - -1.0
509,554 - +0.3
509,554 - -0.2
509,582 - -2.7
509,587 + +1.1
509,624 + -0.0
509,624 + +1.3
509,632 + +1.7
509,644 + +0.9
509,675 + +1.6
509,688 + -0.8
509,688 + -0.1
509,713 + +0.0
509,960 - -0.6
510,008 + +0.3
510,011 - -2.6
510,032 + -0.0
510,033 - +0.8
510,033 - +0.3
510,065 + Echvi_0465 0.12 +1.0
510,066 - Echvi_0465 0.12 +0.2
510,109 - Echvi_0465 0.15 -0.6
510,133 + Echvi_0465 0.17 -0.6
510,134 - Echvi_0465 0.17 -2.0
510,185 - Echvi_0465 0.21 +1.0
510,185 - Echvi_0465 0.21 +0.5
510,206 - Echvi_0465 0.22 -3.3
510,257 - Echvi_0465 0.26 +0.4
510,257 - Echvi_0465 0.26 -0.5
510,257 - Echvi_0465 0.26 -2.2
510,257 - Echvi_0465 0.26 -0.9
510,257 - Echvi_0465 0.26 +0.2
510,306 - Echvi_0465 0.30 -1.0
510,383 - Echvi_0465 0.36 +0.7
510,436 - Echvi_0465 0.40 -2.7
510,436 - Echvi_0465 0.40 +0.3
510,464 - Echvi_0465 0.42 -0.2
510,464 - Echvi_0465 0.42 -2.1
510,545 - Echvi_0465 0.48 -1.0
510,550 - Echvi_0465 0.48 -0.3
510,554 - Echvi_0465 0.48 -0.2
510,613 - Echvi_0465 0.53 -0.1
510,640 - Echvi_0465 0.55 +0.4
510,752 - Echvi_0465 0.63 -0.3
510,759 - Echvi_0465 0.64 -0.1
510,879 - Echvi_0465 0.73 -1.1
510,879 - Echvi_0465 0.73 -1.8
510,879 - Echvi_0465 0.73 -0.7
510,879 - Echvi_0465 0.73 +1.1
510,995 - Echvi_0465 0.82 +0.7
510,995 - Echvi_0465 0.82 +0.2
511,007 - Echvi_0465 0.82 -1.7
511,007 - Echvi_0465 0.82 +0.4
511,007 - Echvi_0465 0.82 +1.0
511,084 - Echvi_0465 0.88 -0.6
511,086 - Echvi_0465 0.88 -2.6
511,086 - Echvi_0465 0.88 -1.0
511,112 - +0.0
511,112 - -2.1
511,112 - -1.2
511,146 - +0.7
511,146 - -1.8
511,161 - -2.3
511,161 - -0.8
511,176 - -1.7
511,176 - -0.3
511,199 - -0.7
511,295 + Echvi_0466 0.10 -2.9
511,310 + Echvi_0466 0.12 +0.2
511,311 - Echvi_0466 0.12 +0.8
511,311 - Echvi_0466 0.12 -0.9
511,311 - Echvi_0466 0.12 -1.7
511,349 + Echvi_0466 0.18 +0.2
511,350 - Echvi_0466 0.18 +0.4
511,354 + Echvi_0466 0.18 +0.6
511,354 + Echvi_0466 0.18 +0.0
511,354 + Echvi_0466 0.18 -0.4
511,355 - Echvi_0466 0.19 -1.9
511,355 - Echvi_0466 0.19 -0.0
511,358 - Echvi_0466 0.19 +0.5
511,358 - Echvi_0466 0.19 -0.0
511,358 - Echvi_0466 0.19 -0.6
511,361 - Echvi_0466 0.19 -0.6
511,407 - Echvi_0466 0.26 +2.0
511,412 - Echvi_0466 0.27 -0.8
511,447 - Echvi_0466 0.32 -0.3
511,447 - Echvi_0466 0.32 -0.1
511,451 + Echvi_0466 0.32 -1.2
511,451 + Echvi_0466 0.32 +3.0
511,451 + Echvi_0466 0.32 -1.0
511,452 - Echvi_0466 0.32 -0.3
511,465 + Echvi_0466 0.34 -0.2
511,511 - Echvi_0466 0.41 +0.0
511,511 - Echvi_0466 0.41 -0.0
511,553 + Echvi_0466 0.47 -1.7
511,554 - Echvi_0466 0.47 +0.7
511,677 + Echvi_0466 0.64 +0.7
511,677 + Echvi_0466 0.64 -2.6
511,677 + Echvi_0466 0.64 -0.4
511,677 + Echvi_0466 0.64 +0.8
511,678 - Echvi_0466 0.64 -0.1
511,723 - Echvi_0466 0.71 -1.2
511,723 - Echvi_0466 0.71 -0.3
511,723 - Echvi_0466 0.71 +2.7
511,747 + Echvi_0466 0.74 +1.0
511,797 - Echvi_0466 0.81 +2.5
511,803 - Echvi_0466 0.82 +1.0
511,803 - Echvi_0466 0.82 +0.1
511,913 - -0.2
511,913 - -0.0
511,926 + +0.6
511,927 - -1.5
511,927 - -0.0
511,940 + -0.6
511,940 + -0.0
511,983 + +1.1
511,983 + -1.5
511,983 + -1.6
511,983 + -1.5
511,983 + -2.4
511,983 + -0.8
511,983 + -0.1
511,984 - +0.8
511,984 - -1.2
511,984 - +1.2
511,984 - -0.1
511,984 - -0.6
511,984 - +0.4
511,987 + +1.5
511,991 + +1.0
511,991 + +1.4
511,991 + -0.8
512,011 + +1.1
512,038 + -0.9
512,070 + -0.0
512,079 + -1.0
512,089 - Echvi_0467 0.12 -0.5
512,124 + Echvi_0467 0.20 +0.5
512,179 - Echvi_0467 0.33 +0.5
512,179 - Echvi_0467 0.33 +0.5
512,182 - Echvi_0467 0.34 +0.5
512,182 - Echvi_0467 0.34 -0.2

Or see this region's nucleotide sequence