Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0380

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0379 and Echvi_0380 are separated by 71 nucleotidesEchvi_0380 and Echvi_0381 overlap by 1 nucleotides Echvi_0379: Echvi_0379 - FOG: Transposase and inactivated derivatives, at 404,855 to 406,087 _0379 Echvi_0380: Echvi_0380 - hypothetical protein, at 406,159 to 406,518 _0380 Echvi_0381: Echvi_0381 - Restriction endonuclease S subunits, at 406,518 to 407,846 _0381 Position (kb) 406 407Strain fitness (log2 ratio) -2 -1 0 1 2at 406.200 kb on + strand, within Echvi_0380at 406.215 kb on + strand, within Echvi_0380at 406.220 kb on + strand, within Echvi_0380at 406.262 kb on + strand, within Echvi_0380at 406.263 kb on - strand, within Echvi_0380at 406.277 kb on + strand, within Echvi_0380at 406.278 kb on - strand, within Echvi_0380at 406.289 kb on - strand, within Echvi_0380at 406.295 kb on - strand, within Echvi_0380at 406.368 kb on + strand, within Echvi_0380at 406.393 kb on - strand, within Echvi_0380at 406.415 kb on - strand, within Echvi_0380at 406.417 kb on - strand, within Echvi_0380at 406.427 kb on + strand, within Echvi_0380at 406.428 kb on - strand, within Echvi_0380at 406.428 kb on - strand, within Echvi_0380at 406.472 kb on + strand, within Echvi_0380at 406.479 kb on + strand, within Echvi_0380at 406.481 kb on + strand, within Echvi_0380at 406.481 kb on + strand, within Echvi_0380at 406.481 kb on + strand, within Echvi_0380at 406.604 kb on + strandat 406.604 kb on + strandat 406.605 kb on - strandat 406.627 kb on + strandat 406.641 kb on - strandat 406.645 kb on - strandat 406.645 kb on - strandat 406.695 kb on + strand, within Echvi_0381at 406.695 kb on + strand, within Echvi_0381at 406.695 kb on + strand, within Echvi_0381at 406.695 kb on + strand, within Echvi_0381at 406.696 kb on - strand, within Echvi_0381at 406.696 kb on - strand, within Echvi_0381at 406.696 kb on - strand, within Echvi_0381at 406.696 kb on - strand, within Echvi_0381at 406.860 kb on + strand, within Echvi_0381at 406.860 kb on + strand, within Echvi_0381at 406.860 kb on + strand, within Echvi_0381at 406.860 kb on + strand, within Echvi_0381at 406.860 kb on + strand, within Echvi_0381at 406.904 kb on + strand, within Echvi_0381at 406.905 kb on - strand, within Echvi_0381at 406.916 kb on + strand, within Echvi_0381at 406.916 kb on + strand, within Echvi_0381at 406.916 kb on + strand, within Echvi_0381at 406.962 kb on + strand, within Echvi_0381at 406.963 kb on - strand, within Echvi_0381at 406.986 kb on - strand, within Echvi_0381at 406.989 kb on + strand, within Echvi_0381at 406.990 kb on - strand, within Echvi_0381at 406.990 kb on - strand, within Echvi_0381at 406.993 kb on - strand, within Echvi_0381at 407.074 kb on + strand, within Echvi_0381at 407.082 kb on - strand, within Echvi_0381at 407.103 kb on - strand, within Echvi_0381at 407.129 kb on + strand, within Echvi_0381at 407.165 kb on + strand, within Echvi_0381at 407.301 kb on - strand, within Echvi_0381at 407.301 kb on - strand, within Echvi_0381at 407.301 kb on - strand, within Echvi_0381at 407.391 kb on - strand, within Echvi_0381at 407.425 kb on - strand, within Echvi_0381at 407.481 kb on + strand, within Echvi_0381at 407.482 kb on - strand, within Echvi_0381at 407.510 kb on + strand, within Echvi_0381

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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406,200 + Echvi_0380 0.11 -2.0
406,215 + Echvi_0380 0.16 -0.3
406,220 + Echvi_0380 0.17 +2.4
406,262 + Echvi_0380 0.29 -0.8
406,263 - Echvi_0380 0.29 -1.4
406,277 + Echvi_0380 0.33 -1.0
406,278 - Echvi_0380 0.33 -0.1
406,289 - Echvi_0380 0.36 -0.9
406,295 - Echvi_0380 0.38 +2.7
406,368 + Echvi_0380 0.58 +0.1
406,393 - Echvi_0380 0.65 -1.5
406,415 - Echvi_0380 0.71 -0.2
406,417 - Echvi_0380 0.72 -1.4
406,427 + Echvi_0380 0.74 -1.0
406,428 - Echvi_0380 0.75 +0.6
406,428 - Echvi_0380 0.75 -0.1
406,472 + Echvi_0380 0.87 +0.9
406,479 + Echvi_0380 0.89 -0.1
406,481 + Echvi_0380 0.89 +0.1
406,481 + Echvi_0380 0.89 -0.9
406,481 + Echvi_0380 0.89 -0.1
406,604 + -0.5
406,604 + +0.4
406,605 - -0.4
406,627 + -0.7
406,641 - +0.7
406,645 - +0.5
406,645 - -0.2
406,695 + Echvi_0381 0.13 +0.6
406,695 + Echvi_0381 0.13 +0.6
406,695 + Echvi_0381 0.13 -0.7
406,695 + Echvi_0381 0.13 -0.1
406,696 - Echvi_0381 0.13 +1.3
406,696 - Echvi_0381 0.13 -0.1
406,696 - Echvi_0381 0.13 -0.7
406,696 - Echvi_0381 0.13 -0.6
406,860 + Echvi_0381 0.26 -2.1
406,860 + Echvi_0381 0.26 +1.4
406,860 + Echvi_0381 0.26 +0.5
406,860 + Echvi_0381 0.26 -0.7
406,860 + Echvi_0381 0.26 +0.1
406,904 + Echvi_0381 0.29 -0.4
406,905 - Echvi_0381 0.29 +0.1
406,916 + Echvi_0381 0.30 +1.0
406,916 + Echvi_0381 0.30 +0.1
406,916 + Echvi_0381 0.30 -2.0
406,962 + Echvi_0381 0.33 -0.3
406,963 - Echvi_0381 0.33 +0.5
406,986 - Echvi_0381 0.35 +1.8
406,989 + Echvi_0381 0.35 +0.8
406,990 - Echvi_0381 0.36 -0.1
406,990 - Echvi_0381 0.36 +0.1
406,993 - Echvi_0381 0.36 -0.3
407,074 + Echvi_0381 0.42 +0.8
407,082 - Echvi_0381 0.42 +0.5
407,103 - Echvi_0381 0.44 +1.0
407,129 + Echvi_0381 0.46 -1.0
407,165 + Echvi_0381 0.49 +0.6
407,301 - Echvi_0381 0.59 +0.8
407,301 - Echvi_0381 0.59 +0.4
407,301 - Echvi_0381 0.59 -0.7
407,391 - Echvi_0381 0.66 -0.6
407,425 - Echvi_0381 0.68 +0.6
407,481 + Echvi_0381 0.72 +0.5
407,482 - Echvi_0381 0.73 -1.4
407,510 + Echvi_0381 0.75 +1.0

Or see this region's nucleotide sequence