Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21060

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21055 and CA264_21060 are separated by 20 nucleotidesCA264_21060 and CA264_21065 are separated by 138 nucleotidesCA264_21065 and CA264_21070 are separated by 39 nucleotides CA264_21055: CA264_21055 - CusA/CzcA family heavy metal efflux RND transporter, at 71,522 to 75,931 _21055 CA264_21060: CA264_21060 - hypothetical protein, at 75,952 to 77,211 _21060 CA264_21065: CA264_21065 - transcriptional regulator, at 77,350 to 77,685 _21065 CA264_21070: CA264_21070 - transcriptional repressor, at 77,725 to 78,138 _21070 Position (kb) 75 76 77 78Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 74.991 kb on + strand, within CA264_21055at 74.998 kb on - strand, within CA264_21055at 75.097 kb on + strand, within CA264_21055at 75.097 kb on + strand, within CA264_21055at 75.100 kb on - strand, within CA264_21055at 75.117 kb on - strandat 75.135 kb on - strand, within CA264_21055at 75.227 kb on + strand, within CA264_21055at 75.228 kb on - strand, within CA264_21055at 75.264 kb on + strand, within CA264_21055at 75.265 kb on - strand, within CA264_21055at 75.286 kb on + strand, within CA264_21055at 75.286 kb on + strand, within CA264_21055at 75.290 kb on + strand, within CA264_21055at 75.291 kb on - strand, within CA264_21055at 75.291 kb on - strand, within CA264_21055at 75.393 kb on + strand, within CA264_21055at 75.428 kb on + strand, within CA264_21055at 75.509 kb on + strandat 75.545 kb on + strandat 75.677 kb on + strandat 75.713 kb on - strandat 75.725 kb on + strandat 75.726 kb on - strandat 75.726 kb on - strandat 75.729 kb on - strandat 75.806 kb on + strandat 75.841 kb on - strandat 75.906 kb on - strandat 75.938 kb on + strandat 75.978 kb on - strandat 76.084 kb on - strand, within CA264_21060at 76.116 kb on + strand, within CA264_21060at 76.166 kb on + strand, within CA264_21060at 76.166 kb on + strand, within CA264_21060at 76.166 kb on + strand, within CA264_21060at 76.173 kb on - strand, within CA264_21060at 76.254 kb on + strand, within CA264_21060at 76.376 kb on - strand, within CA264_21060at 76.376 kb on - strand, within CA264_21060at 76.396 kb on + strand, within CA264_21060at 76.396 kb on + strand, within CA264_21060at 76.396 kb on + strand, within CA264_21060at 76.396 kb on + strand, within CA264_21060at 76.449 kb on + strand, within CA264_21060at 76.574 kb on - strand, within CA264_21060at 76.610 kb on + strand, within CA264_21060at 76.611 kb on - strand, within CA264_21060at 76.698 kb on + strand, within CA264_21060at 76.723 kb on - strand, within CA264_21060at 76.750 kb on + strand, within CA264_21060at 76.751 kb on - strand, within CA264_21060at 76.752 kb on + strand, within CA264_21060at 76.753 kb on - strand, within CA264_21060at 76.753 kb on - strand, within CA264_21060at 76.763 kb on + strand, within CA264_21060at 76.763 kb on + strand, within CA264_21060at 76.763 kb on + strand, within CA264_21060at 76.764 kb on - strand, within CA264_21060at 76.765 kb on + strand, within CA264_21060at 76.765 kb on + strand, within CA264_21060at 76.766 kb on - strand, within CA264_21060at 76.766 kb on - strand, within CA264_21060at 76.766 kb on - strand, within CA264_21060at 76.766 kb on - strand, within CA264_21060at 76.767 kb on + strand, within CA264_21060at 76.767 kb on + strand, within CA264_21060at 76.767 kb on + strand, within CA264_21060at 76.767 kb on + strand, within CA264_21060at 76.768 kb on - strand, within CA264_21060at 76.768 kb on - strand, within CA264_21060at 76.831 kb on - strand, within CA264_21060at 76.831 kb on - strand, within CA264_21060at 76.831 kb on - strand, within CA264_21060at 76.854 kb on + strand, within CA264_21060at 76.854 kb on + strand, within CA264_21060at 76.855 kb on - strand, within CA264_21060at 76.858 kb on + strand, within CA264_21060at 76.858 kb on + strand, within CA264_21060at 76.859 kb on - strand, within CA264_21060at 76.874 kb on + strand, within CA264_21060at 76.874 kb on + strand, within CA264_21060at 76.875 kb on - strand, within CA264_21060at 76.884 kb on + strand, within CA264_21060at 77.076 kb on - strand, within CA264_21060at 77.076 kb on - strand, within CA264_21060at 77.088 kb on + strandat 77.108 kb on + strandat 77.108 kb on + strandat 77.109 kb on - strandat 77.109 kb on - strandat 77.133 kb on + strandat 77.149 kb on + strandat 77.161 kb on + strandat 77.162 kb on - strandat 77.162 kb on - strandat 77.169 kb on + strandat 77.216 kb on + strandat 77.216 kb on + strandat 77.302 kb on - strandat 77.326 kb on - strandat 77.327 kb on + strandat 77.370 kb on + strandat 77.397 kb on - strand, within CA264_21065at 77.573 kb on + strand, within CA264_21065at 77.573 kb on + strand, within CA264_21065at 77.621 kb on - strand, within CA264_21065at 77.621 kb on - strand, within CA264_21065at 77.709 kb on + strandat 77.717 kb on + strandat 77.718 kb on - strandat 77.826 kb on + strand, within CA264_21070at 77.876 kb on + strand, within CA264_21070at 77.877 kb on - strand, within CA264_21070at 77.877 kb on - strand, within CA264_21070at 77.877 kb on - strand, within CA264_21070at 77.916 kb on - strand, within CA264_21070at 77.916 kb on - strand, within CA264_21070at 77.916 kb on - strand, within CA264_21070at 77.950 kb on + strand, within CA264_21070at 77.951 kb on - strand, within CA264_21070at 77.951 kb on - strand, within CA264_21070at 77.951 kb on - strand, within CA264_21070at 78.060 kb on + strand, within CA264_21070at 78.061 kb on - strand, within CA264_21070at 78.061 kb on - strand, within CA264_21070at 78.062 kb on + strand, within CA264_21070at 78.063 kb on - strand, within CA264_21070at 78.063 kb on - strand, within CA264_21070at 78.095 kb on + strand, within CA264_21070at 78.095 kb on + strand, within CA264_21070at 78.136 kb on + strandat 78.137 kb on - strandat 78.137 kb on - strandat 78.145 kb on - strandat 78.181 kb on - strandat 78.191 kb on + strandat 78.191 kb on + strandat 78.191 kb on + strandat 78.191 kb on + strandat 78.192 kb on - strandat 78.192 kb on - strandat 78.192 kb on - strandat 78.192 kb on - strandat 78.192 kb on - strandat 78.192 kb on - strandat 78.194 kb on - strandat 78.203 kb on + strandat 78.203 kb on + strandat 78.204 kb on - strandat 78.204 kb on - strandat 78.204 kb on - strandat 78.206 kb on - strandat 78.207 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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74,991 + CA264_21055 0.79 +0.8
74,998 - CA264_21055 0.79 +1.1
75,097 + CA264_21055 0.81 -0.4
75,097 + CA264_21055 0.81 +0.2
75,100 - CA264_21055 0.81 +0.6
75,117 - +3.4
75,135 - CA264_21055 0.82 +0.3
75,227 + CA264_21055 0.84 +0.0
75,228 - CA264_21055 0.84 +0.1
75,264 + CA264_21055 0.85 +0.2
75,265 - CA264_21055 0.85 +2.1
75,286 + CA264_21055 0.85 +0.4
75,286 + CA264_21055 0.85 +1.2
75,290 + CA264_21055 0.85 +0.9
75,291 - CA264_21055 0.85 +1.8
75,291 - CA264_21055 0.85 +0.4
75,393 + CA264_21055 0.88 -1.4
75,428 + CA264_21055 0.89 -1.9
75,509 + -0.3
75,545 + +1.5
75,677 + -1.5
75,713 - -2.2
75,725 + +1.1
75,726 - +0.2
75,726 - -0.7
75,729 - +0.5
75,806 + -0.5
75,841 - +2.7
75,906 - +1.9
75,938 + +1.4
75,978 - +0.4
76,084 - CA264_21060 0.10 +0.3
76,116 + CA264_21060 0.13 +1.3
76,166 + CA264_21060 0.17 +1.2
76,166 + CA264_21060 0.17 -0.1
76,166 + CA264_21060 0.17 +0.6
76,173 - CA264_21060 0.18 +1.7
76,254 + CA264_21060 0.24 +1.7
76,376 - CA264_21060 0.34 +2.1
76,376 - CA264_21060 0.34 +1.7
76,396 + CA264_21060 0.35 +0.3
76,396 + CA264_21060 0.35 +1.6
76,396 + CA264_21060 0.35 +0.1
76,396 + CA264_21060 0.35 +1.5
76,449 + CA264_21060 0.39 +1.3
76,574 - CA264_21060 0.49 +0.4
76,610 + CA264_21060 0.52 +0.7
76,611 - CA264_21060 0.52 +0.1
76,698 + CA264_21060 0.59 +0.1
76,723 - CA264_21060 0.61 +4.1
76,750 + CA264_21060 0.63 +1.7
76,751 - CA264_21060 0.63 -2.6
76,752 + CA264_21060 0.63 +1.5
76,753 - CA264_21060 0.64 -0.3
76,753 - CA264_21060 0.64 +0.2
76,763 + CA264_21060 0.64 +1.2
76,763 + CA264_21060 0.64 -1.2
76,763 + CA264_21060 0.64 +1.1
76,764 - CA264_21060 0.64 +0.1
76,765 + CA264_21060 0.65 +2.1
76,765 + CA264_21060 0.65 +0.6
76,766 - CA264_21060 0.65 +0.1
76,766 - CA264_21060 0.65 +0.1
76,766 - CA264_21060 0.65 +0.6
76,766 - CA264_21060 0.65 +1.4
76,767 + CA264_21060 0.65 +0.0
76,767 + CA264_21060 0.65 +0.6
76,767 + CA264_21060 0.65 +0.5
76,767 + CA264_21060 0.65 +0.6
76,768 - CA264_21060 0.65 +1.0
76,768 - CA264_21060 0.65 +0.5
76,831 - CA264_21060 0.70 +0.1
76,831 - CA264_21060 0.70 +0.1
76,831 - CA264_21060 0.70 +0.4
76,854 + CA264_21060 0.72 +1.2
76,854 + CA264_21060 0.72 +2.1
76,855 - CA264_21060 0.72 +0.3
76,858 + CA264_21060 0.72 +1.1
76,858 + CA264_21060 0.72 +1.8
76,859 - CA264_21060 0.72 +0.6
76,874 + CA264_21060 0.73 +0.8
76,874 + CA264_21060 0.73 +0.6
76,875 - CA264_21060 0.73 +0.1
76,884 + CA264_21060 0.74 +0.7
77,076 - CA264_21060 0.89 +0.7
77,076 - CA264_21060 0.89 +0.1
77,088 + +0.1
77,108 + +1.3
77,108 + -0.4
77,109 - -0.3
77,109 - +0.5
77,133 + +0.9
77,149 + +1.4
77,161 + -0.9
77,162 - +0.6
77,162 - +0.6
77,169 + +1.4
77,216 + +0.9
77,216 + +1.5
77,302 - +0.3
77,326 - -0.5
77,327 + +0.5
77,370 + +3.2
77,397 - CA264_21065 0.14 -0.2
77,573 + CA264_21065 0.66 +0.1
77,573 + CA264_21065 0.66 -0.0
77,621 - CA264_21065 0.81 +0.8
77,621 - CA264_21065 0.81 +0.3
77,709 + +0.7
77,717 + +1.5
77,718 - -0.1
77,826 + CA264_21070 0.24 +1.2
77,876 + CA264_21070 0.36 +0.5
77,877 - CA264_21070 0.37 -0.2
77,877 - CA264_21070 0.37 +2.7
77,877 - CA264_21070 0.37 +0.7
77,916 - CA264_21070 0.46 -1.1
77,916 - CA264_21070 0.46 -0.2
77,916 - CA264_21070 0.46 +0.1
77,950 + CA264_21070 0.54 +1.0
77,951 - CA264_21070 0.55 +0.6
77,951 - CA264_21070 0.55 +0.3
77,951 - CA264_21070 0.55 -0.5
78,060 + CA264_21070 0.81 +1.0
78,061 - CA264_21070 0.81 +0.5
78,061 - CA264_21070 0.81 +0.1
78,062 + CA264_21070 0.81 +1.1
78,063 - CA264_21070 0.82 +0.3
78,063 - CA264_21070 0.82 +0.1
78,095 + CA264_21070 0.89 +2.0
78,095 + CA264_21070 0.89 +1.3
78,136 + -0.2
78,137 - +1.8
78,137 - +0.7
78,145 - -0.3
78,181 - +1.1
78,191 + -1.9
78,191 + +0.5
78,191 + -0.8
78,191 + +1.5
78,192 - -0.0
78,192 - +0.7
78,192 - +0.5
78,192 - +0.3
78,192 - -0.3
78,192 - -0.8
78,194 - +1.3
78,203 + +2.1
78,203 + +1.8
78,204 - +1.6
78,204 - -0.4
78,204 - +0.6
78,206 - +0.2
78,207 + +1.0

Or see this region's nucleotide sequence