Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21045

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21040 and CA264_21045 are separated by 850 nucleotidesCA264_21045 and CA264_21050 are separated by 100 nucleotidesCA264_21050 and CA264_21055 are separated by 6 nucleotides CA264_21040: CA264_21040 - transcriptional regulator, at 69,669 to 70,019 _21040 CA264_21045: CA264_21045 - hypothetical protein, at 70,870 to 71,220 _21045 CA264_21050: CA264_21050 - hypothetical protein, at 71,321 to 71,515 _21050 CA264_21055: CA264_21055 - CusA/CzcA family heavy metal efflux RND transporter, at 71,522 to 75,931 _21055 Position (kb) 70 71 72Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 69.997 kb on + strandat 70.017 kb on + strandat 70.018 kb on - strandat 70.051 kb on - strandat 70.060 kb on + strandat 70.063 kb on + strandat 70.063 kb on + strandat 70.065 kb on + strandat 70.160 kb on - strandat 70.199 kb on - strandat 70.343 kb on + strandat 70.343 kb on + strandat 70.344 kb on - strandat 70.361 kb on - strandat 70.370 kb on + strandat 70.370 kb on + strandat 70.391 kb on + strandat 70.399 kb on + strandat 70.400 kb on - strandat 70.402 kb on - strandat 70.420 kb on - strandat 70.458 kb on - strandat 70.500 kb on + strandat 70.500 kb on + strandat 70.500 kb on + strandat 70.515 kb on + strandat 70.533 kb on - strandat 70.571 kb on - strandat 70.574 kb on - strandat 70.579 kb on + strandat 70.581 kb on + strandat 70.582 kb on - strandat 70.582 kb on - strandat 70.582 kb on - strandat 70.585 kb on + strandat 70.585 kb on + strandat 70.586 kb on - strandat 70.586 kb on - strandat 70.586 kb on - strandat 70.587 kb on + strandat 70.587 kb on + strandat 70.587 kb on + strandat 70.588 kb on - strandat 70.588 kb on - strandat 70.631 kb on - strandat 70.631 kb on - strandat 70.634 kb on + strandat 70.635 kb on - strandat 70.635 kb on - strandat 70.638 kb on - strandat 70.638 kb on - strandat 70.641 kb on + strandat 70.641 kb on + strandat 70.642 kb on - strandat 70.671 kb on + strandat 70.671 kb on + strandat 70.672 kb on - strandat 70.691 kb on - strandat 70.701 kb on + strandat 70.701 kb on + strandat 70.702 kb on - strandat 70.705 kb on + strandat 70.706 kb on - strandat 70.706 kb on - strandat 70.712 kb on + strandat 70.712 kb on + strandat 70.712 kb on + strandat 70.712 kb on + strandat 70.713 kb on - strandat 70.720 kb on + strandat 70.721 kb on - strandat 70.727 kb on - strandat 70.727 kb on - strandat 70.743 kb on + strandat 70.744 kb on - strandat 70.744 kb on - strandat 70.744 kb on - strandat 70.759 kb on - strandat 70.803 kb on + strandat 70.804 kb on - strandat 70.824 kb on + strandat 70.837 kb on - strandat 70.871 kb on + strandat 70.876 kb on + strandat 70.877 kb on - strandat 70.880 kb on + strandat 70.881 kb on - strandat 70.974 kb on + strand, within CA264_21045at 71.065 kb on - strand, within CA264_21045at 71.073 kb on - strand, within CA264_21045at 71.120 kb on - strand, within CA264_21045at 71.120 kb on - strand, within CA264_21045at 71.127 kb on + strand, within CA264_21045at 71.216 kb on + strandat 71.256 kb on - strandat 71.260 kb on - strandat 71.351 kb on - strand, within CA264_21050at 71.385 kb on - strand, within CA264_21050at 71.443 kb on - strand, within CA264_21050at 71.487 kb on - strand, within CA264_21050at 71.533 kb on + strandat 71.534 kb on - strandat 71.534 kb on - strandat 71.624 kb on - strandat 71.644 kb on + strandat 71.720 kb on + strandat 71.720 kb on + strandat 71.831 kb on + strandat 71.831 kb on + strandat 71.832 kb on - strandat 71.832 kb on - strandat 71.871 kb on + strandat 71.934 kb on + strandat 71.936 kb on + strandat 71.936 kb on + strandat 71.936 kb on + strandat 71.937 kb on - strandat 71.937 kb on - strandat 71.937 kb on - strandat 71.937 kb on - strandat 71.943 kb on - strandat 71.978 kb on + strand, within CA264_21055at 71.979 kb on - strand, within CA264_21055at 71.994 kb on + strand, within CA264_21055at 71.995 kb on - strand, within CA264_21055at 71.995 kb on - strand, within CA264_21055at 71.995 kb on - strand, within CA264_21055at 71.998 kb on + strand, within CA264_21055at 71.999 kb on - strand, within CA264_21055at 72.003 kb on + strand, within CA264_21055at 72.003 kb on + strand, within CA264_21055at 72.004 kb on - strand, within CA264_21055at 72.004 kb on - strand, within CA264_21055at 72.058 kb on - strand, within CA264_21055at 72.115 kb on + strand, within CA264_21055at 72.116 kb on - strand, within CA264_21055at 72.144 kb on + strand, within CA264_21055at 72.188 kb on + strand, within CA264_21055

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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69,997 + +0.9
70,017 + +0.4
70,018 - +0.2
70,051 - +0.3
70,060 + -1.7
70,063 + -0.8
70,063 + +0.1
70,065 + +1.7
70,160 - -0.9
70,199 - -0.3
70,343 + -0.7
70,343 + -2.1
70,344 - +0.2
70,361 - +0.2
70,370 + -0.9
70,370 + -0.5
70,391 + -0.1
70,399 + -0.7
70,400 - -0.3
70,402 - -0.3
70,420 - -2.0
70,458 - +1.1
70,500 + -0.9
70,500 + -0.7
70,500 + -1.3
70,515 + -0.4
70,533 - -0.1
70,571 - +0.1
70,574 - -0.2
70,579 + +0.5
70,581 + -1.4
70,582 - -1.9
70,582 - -0.1
70,582 - +0.2
70,585 + +1.1
70,585 + -2.1
70,586 - +0.5
70,586 - -0.7
70,586 - -0.7
70,587 + -0.2
70,587 + -1.4
70,587 + +1.1
70,588 - -0.1
70,588 - +0.1
70,631 - +0.8
70,631 - +0.0
70,634 + -3.4
70,635 - +0.4
70,635 - -2.4
70,638 - +0.1
70,638 - +0.2
70,641 + -2.5
70,641 + -0.9
70,642 - +0.0
70,671 + -1.7
70,671 + -2.0
70,672 - -0.7
70,691 - +1.5
70,701 + -0.9
70,701 + -1.9
70,702 - -0.9
70,705 + -0.5
70,706 - -0.4
70,706 - -0.5
70,712 + -2.7
70,712 + -1.2
70,712 + -1.0
70,712 + -0.1
70,713 - +0.0
70,720 + -2.2
70,721 - -2.8
70,727 - -0.3
70,727 - +0.3
70,743 + -2.0
70,744 - -0.1
70,744 - -0.4
70,744 - -0.4
70,759 - -0.2
70,803 + -0.2
70,804 - +0.1
70,824 + -2.4
70,837 - -1.9
70,871 + -1.5
70,876 + -2.5
70,877 - +0.5
70,880 + -2.6
70,881 - -0.1
70,974 + CA264_21045 0.30 -3.7
71,065 - CA264_21045 0.56 +1.5
71,073 - CA264_21045 0.58 -0.9
71,120 - CA264_21045 0.71 +0.2
71,120 - CA264_21045 0.71 +1.1
71,127 + CA264_21045 0.73 -1.5
71,216 + -1.9
71,256 - -0.7
71,260 - -1.4
71,351 - CA264_21050 0.15 +0.6
71,385 - CA264_21050 0.33 -1.7
71,443 - CA264_21050 0.63 -0.1
71,487 - CA264_21050 0.85 -0.0
71,533 + -0.6
71,534 - +0.6
71,534 - +0.0
71,624 - +0.1
71,644 + +0.1
71,720 + +0.0
71,720 + +0.9
71,831 + +0.6
71,831 + +1.8
71,832 - -2.7
71,832 - +0.3
71,871 + +0.5
71,934 + +0.5
71,936 + +1.7
71,936 + -0.9
71,936 + +1.1
71,937 - +0.1
71,937 - -1.5
71,937 - -0.4
71,937 - +0.7
71,943 - -0.5
71,978 + CA264_21055 0.10 +0.7
71,979 - CA264_21055 0.10 +0.7
71,994 + CA264_21055 0.11 -0.3
71,995 - CA264_21055 0.11 +1.9
71,995 - CA264_21055 0.11 -0.2
71,995 - CA264_21055 0.11 -0.2
71,998 + CA264_21055 0.11 +0.8
71,999 - CA264_21055 0.11 -0.0
72,003 + CA264_21055 0.11 +1.1
72,003 + CA264_21055 0.11 -0.5
72,004 - CA264_21055 0.11 +0.5
72,004 - CA264_21055 0.11 -0.5
72,058 - CA264_21055 0.12 -0.6
72,115 + CA264_21055 0.13 +0.8
72,116 - CA264_21055 0.13 +1.8
72,144 + CA264_21055 0.14 +1.8
72,188 + CA264_21055 0.15 +0.9

Or see this region's nucleotide sequence