Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20900

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20895 and CA264_20900 overlap by 1 nucleotidesCA264_20900 and CA264_20905 overlap by 4 nucleotidesCA264_20905 and CA264_20910 are separated by 146 nucleotides CA264_20895: CA264_20895 - hypothetical protein, at 44,864 to 45,274 _20895 CA264_20900: CA264_20900 - hypothetical protein, at 45,274 to 45,897 _20900 CA264_20905: CA264_20905 - hypothetical protein, at 45,894 to 46,130 _20905 CA264_20910: CA264_20910 - hypothetical protein, at 46,277 to 47,398 _20910 Position (kb) 45 46Strain fitness (log2 ratio) -2 -1 0 1 2at 44.329 kb on - strandat 44.349 kb on + strandat 44.349 kb on + strandat 44.357 kb on + strandat 44.358 kb on - strandat 44.360 kb on + strandat 44.361 kb on - strandat 44.361 kb on - strandat 44.365 kb on - strandat 44.413 kb on + strandat 44.457 kb on - strandat 44.494 kb on - strandat 44.590 kb on - strandat 44.653 kb on - strandat 44.653 kb on - strandat 44.691 kb on - strandat 44.692 kb on + strandat 44.693 kb on - strandat 44.706 kb on + strandat 44.707 kb on - strandat 44.708 kb on + strandat 44.709 kb on - strandat 44.716 kb on + strandat 44.818 kb on - strandat 44.826 kb on + strandat 44.835 kb on + strandat 44.841 kb on + strandat 44.850 kb on + strandat 44.850 kb on + strandat 44.850 kb on + strandat 44.851 kb on - strandat 44.875 kb on - strandat 44.907 kb on + strand, within CA264_20895at 44.945 kb on + strand, within CA264_20895at 44.945 kb on + strand, within CA264_20895at 44.946 kb on - strand, within CA264_20895at 44.962 kb on - strand, within CA264_20895at 44.962 kb on - strand, within CA264_20895at 44.993 kb on - strand, within CA264_20895at 44.993 kb on - strand, within CA264_20895at 44.995 kb on - strand, within CA264_20895at 45.214 kb on + strand, within CA264_20895at 45.286 kb on + strandat 45.342 kb on + strand, within CA264_20900at 45.347 kb on + strand, within CA264_20900at 45.378 kb on + strand, within CA264_20900at 45.379 kb on - strand, within CA264_20900at 45.379 kb on - strand, within CA264_20900at 45.399 kb on + strand, within CA264_20900at 45.524 kb on + strand, within CA264_20900at 45.525 kb on - strand, within CA264_20900at 45.525 kb on - strand, within CA264_20900at 45.596 kb on + strand, within CA264_20900at 45.597 kb on - strand, within CA264_20900at 45.638 kb on - strand, within CA264_20900at 45.740 kb on + strand, within CA264_20900at 45.838 kb on - strandat 45.880 kb on - strandat 45.880 kb on - strandat 45.894 kb on - strandat 45.968 kb on + strand, within CA264_20905at 45.969 kb on - strand, within CA264_20905at 45.969 kb on - strand, within CA264_20905at 45.969 kb on - strand, within CA264_20905at 45.974 kb on + strand, within CA264_20905at 46.045 kb on - strand, within CA264_20905at 46.047 kb on - strand, within CA264_20905at 46.154 kb on - strandat 46.182 kb on + strandat 46.211 kb on + strandat 46.211 kb on + strandat 46.276 kb on + strandat 46.277 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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44,329 - -0.8
44,349 + -0.0
44,349 + +1.7
44,357 + -1.1
44,358 - +0.3
44,360 + +0.1
44,361 - +0.7
44,361 - -0.5
44,365 - +0.1
44,413 + +0.5
44,457 - -0.4
44,494 - -0.7
44,590 - +0.8
44,653 - -2.2
44,653 - +0.8
44,691 - -0.3
44,692 + -0.5
44,693 - -1.5
44,706 + -0.4
44,707 - -0.5
44,708 + -0.2
44,709 - -0.1
44,716 + +2.4
44,818 - +0.4
44,826 + +0.9
44,835 + -0.7
44,841 + -0.9
44,850 + -0.5
44,850 + +0.1
44,850 + -0.5
44,851 - -0.3
44,875 - -0.5
44,907 + CA264_20895 0.10 -0.2
44,945 + CA264_20895 0.20 +0.3
44,945 + CA264_20895 0.20 -0.2
44,946 - CA264_20895 0.20 +0.3
44,962 - CA264_20895 0.24 +0.2
44,962 - CA264_20895 0.24 +0.5
44,993 - CA264_20895 0.31 -0.1
44,993 - CA264_20895 0.31 +0.1
44,995 - CA264_20895 0.32 -0.1
45,214 + CA264_20895 0.85 -1.5
45,286 + -0.8
45,342 + CA264_20900 0.11 -0.8
45,347 + CA264_20900 0.12 +0.7
45,378 + CA264_20900 0.17 -2.0
45,379 - CA264_20900 0.17 -0.0
45,379 - CA264_20900 0.17 -0.8
45,399 + CA264_20900 0.20 -0.7
45,524 + CA264_20900 0.40 -0.4
45,525 - CA264_20900 0.40 +2.7
45,525 - CA264_20900 0.40 -0.4
45,596 + CA264_20900 0.52 -1.5
45,597 - CA264_20900 0.52 -0.2
45,638 - CA264_20900 0.58 -0.3
45,740 + CA264_20900 0.75 -1.1
45,838 - -0.4
45,880 - +0.1
45,880 - +0.9
45,894 - -0.5
45,968 + CA264_20905 0.31 +0.3
45,969 - CA264_20905 0.32 -0.6
45,969 - CA264_20905 0.32 +0.1
45,969 - CA264_20905 0.32 -0.5
45,974 + CA264_20905 0.34 -0.5
46,045 - CA264_20905 0.64 -1.1
46,047 - CA264_20905 0.65 -0.1
46,154 - -0.2
46,182 + -0.4
46,211 + -0.0
46,211 + +1.0
46,276 + +1.3
46,277 - -0.1

Or see this region's nucleotide sequence