Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20830

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20825 and CA264_20830 are separated by 11 nucleotidesCA264_20830 and CA264_20835 are separated by 555 nucleotides CA264_20825: CA264_20825 - hypothetical protein, at 23,719 to 25,344 _20825 CA264_20830: CA264_20830 - hypothetical protein, at 25,356 to 25,697 _20830 CA264_20835: CA264_20835 - hypothetical protein, at 26,253 to 27,875 _20835 Position (kb) 25 26Strain fitness (log2 ratio) -2 -1 0 1 2at 24.405 kb on + strand, within CA264_20825at 24.405 kb on + strand, within CA264_20825at 24.406 kb on - strand, within CA264_20825at 24.409 kb on - strand, within CA264_20825at 24.425 kb on + strand, within CA264_20825at 24.425 kb on + strand, within CA264_20825at 24.436 kb on + strand, within CA264_20825at 24.437 kb on - strand, within CA264_20825at 24.439 kb on - strand, within CA264_20825at 24.448 kb on - strand, within CA264_20825at 24.517 kb on + strand, within CA264_20825at 24.517 kb on + strand, within CA264_20825at 24.517 kb on + strand, within CA264_20825at 24.517 kb on + strand, within CA264_20825at 24.518 kb on - strand, within CA264_20825at 24.518 kb on - strand, within CA264_20825at 24.518 kb on - strand, within CA264_20825at 24.630 kb on - strand, within CA264_20825at 24.649 kb on - strand, within CA264_20825at 24.659 kb on + strand, within CA264_20825at 24.660 kb on - strand, within CA264_20825at 24.706 kb on + strand, within CA264_20825at 24.707 kb on - strand, within CA264_20825at 24.710 kb on + strand, within CA264_20825at 24.710 kb on + strand, within CA264_20825at 24.710 kb on + strand, within CA264_20825at 24.790 kb on + strand, within CA264_20825at 24.850 kb on + strand, within CA264_20825at 24.851 kb on - strand, within CA264_20825at 24.851 kb on - strand, within CA264_20825at 24.851 kb on - strand, within CA264_20825at 24.865 kb on - strand, within CA264_20825at 24.906 kb on - strand, within CA264_20825at 24.968 kb on + strand, within CA264_20825at 24.969 kb on - strand, within CA264_20825at 24.977 kb on + strand, within CA264_20825at 24.977 kb on + strand, within CA264_20825at 24.977 kb on + strand, within CA264_20825at 24.978 kb on - strand, within CA264_20825at 25.033 kb on + strand, within CA264_20825at 25.033 kb on + strand, within CA264_20825at 25.034 kb on - strand, within CA264_20825at 25.063 kb on + strand, within CA264_20825at 25.063 kb on + strand, within CA264_20825at 25.150 kb on + strand, within CA264_20825at 25.300 kb on + strandat 25.332 kb on - strandat 25.345 kb on - strandat 25.349 kb on + strandat 25.397 kb on + strand, within CA264_20830at 25.398 kb on - strand, within CA264_20830at 25.398 kb on - strand, within CA264_20830at 25.436 kb on + strand, within CA264_20830at 25.697 kb on + strandat 25.698 kb on - strandat 25.703 kb on - strandat 25.704 kb on + strandat 25.705 kb on - strandat 25.705 kb on - strandat 25.705 kb on - strandat 25.725 kb on + strandat 25.729 kb on + strandat 25.860 kb on + strandat 25.860 kb on + strandat 25.860 kb on + strandat 25.880 kb on + strandat 25.947 kb on - strandat 25.947 kb on - strandat 25.949 kb on - strandat 25.949 kb on - strandat 25.949 kb on - strandat 25.952 kb on + strandat 25.952 kb on + strandat 25.953 kb on - strandat 25.953 kb on - strandat 26.066 kb on - strandat 26.158 kb on - strandat 26.158 kb on - strandat 26.213 kb on + strandat 26.249 kb on + strandat 26.254 kb on + strandat 26.254 kb on + strandat 26.254 kb on + strandat 26.254 kb on + strandat 26.255 kb on - strandat 26.255 kb on - strandat 26.264 kb on + strandat 26.289 kb on - strandat 26.347 kb on + strandat 26.349 kb on + strandat 26.350 kb on - strandat 26.410 kb on - strandat 26.435 kb on + strand, within CA264_20835at 26.436 kb on - strand, within CA264_20835at 26.437 kb on + strand, within CA264_20835at 26.437 kb on + strand, within CA264_20835at 26.438 kb on - strand, within CA264_20835at 26.486 kb on + strand, within CA264_20835at 26.503 kb on + strand, within CA264_20835at 26.504 kb on - strand, within CA264_20835at 26.504 kb on - strand, within CA264_20835at 26.504 kb on - strand, within CA264_20835at 26.509 kb on - strand, within CA264_20835at 26.546 kb on + strand, within CA264_20835at 26.546 kb on + strand, within CA264_20835at 26.547 kb on - strand, within CA264_20835at 26.547 kb on - strand, within CA264_20835at 26.563 kb on + strand, within CA264_20835at 26.613 kb on + strand, within CA264_20835at 26.614 kb on - strand, within CA264_20835at 26.614 kb on - strand, within CA264_20835

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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24,405 + CA264_20825 0.42 -0.2
24,405 + CA264_20825 0.42 -0.5
24,406 - CA264_20825 0.42 +0.8
24,409 - CA264_20825 0.42 -0.0
24,425 + CA264_20825 0.43 -0.9
24,425 + CA264_20825 0.43 +0.8
24,436 + CA264_20825 0.44 +0.5
24,437 - CA264_20825 0.44 +0.3
24,439 - CA264_20825 0.44 -0.7
24,448 - CA264_20825 0.45 +0.4
24,517 + CA264_20825 0.49 -0.8
24,517 + CA264_20825 0.49 +0.2
24,517 + CA264_20825 0.49 -0.2
24,517 + CA264_20825 0.49 +0.2
24,518 - CA264_20825 0.49 -0.1
24,518 - CA264_20825 0.49 +0.0
24,518 - CA264_20825 0.49 +0.4
24,630 - CA264_20825 0.56 +0.2
24,649 - CA264_20825 0.57 -1.9
24,659 + CA264_20825 0.58 +0.5
24,660 - CA264_20825 0.58 +0.9
24,706 + CA264_20825 0.61 -0.7
24,707 - CA264_20825 0.61 -1.2
24,710 + CA264_20825 0.61 -0.1
24,710 + CA264_20825 0.61 +0.1
24,710 + CA264_20825 0.61 -1.5
24,790 + CA264_20825 0.66 -0.7
24,850 + CA264_20825 0.70 +2.7
24,851 - CA264_20825 0.70 -0.3
24,851 - CA264_20825 0.70 -0.2
24,851 - CA264_20825 0.70 +0.6
24,865 - CA264_20825 0.70 +0.5
24,906 - CA264_20825 0.73 -1.0
24,968 + CA264_20825 0.77 -0.2
24,969 - CA264_20825 0.77 -0.8
24,977 + CA264_20825 0.77 -0.2
24,977 + CA264_20825 0.77 -0.0
24,977 + CA264_20825 0.77 -0.6
24,978 - CA264_20825 0.77 -0.2
25,033 + CA264_20825 0.81 -0.2
25,033 + CA264_20825 0.81 -0.5
25,034 - CA264_20825 0.81 -0.5
25,063 + CA264_20825 0.83 -0.1
25,063 + CA264_20825 0.83 -1.2
25,150 + CA264_20825 0.88 +0.4
25,300 + +0.4
25,332 - +0.2
25,345 - -0.8
25,349 + +0.1
25,397 + CA264_20830 0.12 -1.1
25,398 - CA264_20830 0.12 -1.2
25,398 - CA264_20830 0.12 +0.4
25,436 + CA264_20830 0.23 -0.4
25,697 + -1.3
25,698 - -0.9
25,703 - -2.0
25,704 + +1.7
25,705 - -0.3
25,705 - +1.7
25,705 - -0.2
25,725 + +0.5
25,729 + +0.1
25,860 + +0.2
25,860 + +0.4
25,860 + +0.1
25,880 + -1.2
25,947 - -0.2
25,947 - -0.1
25,949 - -0.6
25,949 - -0.9
25,949 - +0.0
25,952 + -0.3
25,952 + -0.2
25,953 - -0.5
25,953 - +0.7
26,066 - -1.7
26,158 - -0.4
26,158 - -0.4
26,213 + -0.9
26,249 + -0.9
26,254 + -0.7
26,254 + +0.8
26,254 + +0.1
26,254 + +0.3
26,255 - +1.1
26,255 - -1.1
26,264 + -1.2
26,289 - +1.7
26,347 + -1.4
26,349 + +0.8
26,350 - -0.5
26,410 - -0.9
26,435 + CA264_20835 0.11 -0.6
26,436 - CA264_20835 0.11 +1.1
26,437 + CA264_20835 0.11 +0.2
26,437 + CA264_20835 0.11 -2.5
26,438 - CA264_20835 0.11 +0.1
26,486 + CA264_20835 0.14 -0.5
26,503 + CA264_20835 0.15 -2.1
26,504 - CA264_20835 0.15 +0.0
26,504 - CA264_20835 0.15 -0.9
26,504 - CA264_20835 0.15 -1.3
26,509 - CA264_20835 0.16 -0.1
26,546 + CA264_20835 0.18 +1.1
26,546 + CA264_20835 0.18 -0.3
26,547 - CA264_20835 0.18 +0.8
26,547 - CA264_20835 0.18 +0.9
26,563 + CA264_20835 0.19 -1.9
26,613 + CA264_20835 0.22 +2.1
26,614 - CA264_20835 0.22 +0.2
26,614 - CA264_20835 0.22 +1.1

Or see this region's nucleotide sequence