Experiment: m.b. Carbenicillin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20545 and CA264_20550 are separated by 129 nucleotides CA264_20550 and CA264_20555 overlap by 8 nucleotides CA264_20555 and CA264_20560 are separated by 211 nucleotides CA264_20560 and CA264_20565 are separated by 69 nucleotides
CA264_20545: CA264_20545 - epimerase, at 4,733,843 to 4,734,760
_20545
CA264_20550: CA264_20550 - GTP cyclohydrolase I FolE, at 4,734,890 to 4,735,558
_20550
CA264_20555: CA264_20555 - 6-pyruvoyl tetrahydrobiopterin synthase, at 4,735,551 to 4,735,958
_20555
CA264_20560: CA264_20560 - DNA repair ATPase, at 4,736,170 to 4,736,868
_20560
CA264_20565: CA264_20565 - hypothetical protein, at 4,736,938 to 4,737,888
_20565
Position (kb) 4735
4736 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4734.568 kb on + strand, within CA264_20545 at 4734.568 kb on + strand, within CA264_20545 at 4734.569 kb on - strand, within CA264_20545 at 4734.570 kb on + strand, within CA264_20545 at 4734.570 kb on + strand, within CA264_20545 at 4734.571 kb on - strand, within CA264_20545 at 4734.571 kb on - strand, within CA264_20545 at 4734.599 kb on + strand, within CA264_20545 at 4734.600 kb on - strand, within CA264_20545 at 4734.600 kb on - strand, within CA264_20545 at 4734.602 kb on - strand, within CA264_20545 at 4734.634 kb on + strand, within CA264_20545 at 4734.635 kb on - strand, within CA264_20545 at 4734.720 kb on - strand at 4734.761 kb on - strand at 4734.761 kb on - strand at 4734.769 kb on - strand at 4734.790 kb on + strand at 4734.796 kb on - strand at 4734.813 kb on - strand at 4734.813 kb on - strand at 4734.830 kb on + strand at 4734.836 kb on - strand at 4734.878 kb on - strand at 4734.878 kb on - strand at 4735.182 kb on + strand, within CA264_20550 at 4735.561 kb on + strand at 4735.562 kb on - strand at 4735.562 kb on - strand at 4735.588 kb on + strand at 4735.589 kb on - strand at 4735.595 kb on + strand, within CA264_20555 at 4735.595 kb on + strand, within CA264_20555 at 4735.828 kb on + strand, within CA264_20555 at 4735.905 kb on - strand, within CA264_20555 at 4735.908 kb on + strand, within CA264_20555 at 4735.958 kb on + strand at 4735.963 kb on + strand at 4735.963 kb on + strand at 4735.963 kb on + strand at 4736.028 kb on - strand at 4736.267 kb on + strand, within CA264_20560 at 4736.300 kb on + strand, within CA264_20560 at 4736.300 kb on + strand, within CA264_20560 at 4736.468 kb on - strand at 4736.468 kb on - strand, within CA264_20560 at 4736.500 kb on + strand, within CA264_20560 at 4736.530 kb on + strand, within CA264_20560 at 4736.575 kb on + strand, within CA264_20560 at 4736.600 kb on + strand, within CA264_20560 at 4736.672 kb on + strand, within CA264_20560 at 4736.685 kb on - strand, within CA264_20560 at 4736.905 kb on + strand at 4736.905 kb on + strand at 4736.935 kb on + strand at 4736.936 kb on - strand at 4736.939 kb on + strand at 4736.940 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml remove 4,734,568 + CA264_20545 0.79 +0.2 4,734,568 + CA264_20545 0.79 -0.6 4,734,569 - CA264_20545 0.79 -0.3 4,734,570 + CA264_20545 0.79 +0.1 4,734,570 + CA264_20545 0.79 +1.1 4,734,571 - CA264_20545 0.79 -0.9 4,734,571 - CA264_20545 0.79 -0.1 4,734,599 + CA264_20545 0.82 +1.4 4,734,600 - CA264_20545 0.82 +0.9 4,734,600 - CA264_20545 0.82 +1.9 4,734,602 - CA264_20545 0.83 -2.7 4,734,634 + CA264_20545 0.86 +0.9 4,734,635 - CA264_20545 0.86 -0.0 4,734,720 - +0.5 4,734,761 - +0.2 4,734,761 - +0.5 4,734,769 - -0.2 4,734,790 + +1.3 4,734,796 - +0.2 4,734,813 - +0.6 4,734,813 - +1.6 4,734,830 + +0.9 4,734,836 - +1.2 4,734,878 - +1.4 4,734,878 - +0.9 4,735,182 + CA264_20550 0.44 +1.9 4,735,561 + -1.4 4,735,562 - +1.3 4,735,562 - +1.7 4,735,588 + -0.5 4,735,589 - +2.7 4,735,595 + CA264_20555 0.11 -0.9 4,735,595 + CA264_20555 0.11 +0.4 4,735,828 + CA264_20555 0.68 -0.1 4,735,905 - CA264_20555 0.87 +1.5 4,735,908 + CA264_20555 0.88 +0.4 4,735,958 + -0.4 4,735,963 + -0.7 4,735,963 + +0.6 4,735,963 + -0.2 4,736,028 - +1.2 4,736,267 + CA264_20560 0.14 +1.2 4,736,300 + CA264_20560 0.19 +1.5 4,736,300 + CA264_20560 0.19 +0.4 4,736,468 - +0.9 4,736,468 - CA264_20560 0.43 +1.6 4,736,500 + CA264_20560 0.47 +0.3 4,736,530 + CA264_20560 0.52 +0.4 4,736,575 + CA264_20560 0.58 -0.0 4,736,600 + CA264_20560 0.62 -0.1 4,736,672 + CA264_20560 0.72 -0.1 4,736,685 - CA264_20560 0.74 +0.5 4,736,905 + +1.1 4,736,905 + +0.5 4,736,935 + -0.0 4,736,936 - +2.5 4,736,939 + -0.1 4,736,940 - +1.3
Or see this region's nucleotide sequence