Experiment: m.b. Carbenicillin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19670 and CA264_19675 are separated by 93 nucleotides CA264_19675 and CA264_19680 are separated by 185 nucleotides
CA264_19670: CA264_19670 - NADPH:quinone oxidoreductase, at 4,541,588 to 4,542,568
_19670
CA264_19675: CA264_19675 - RNA pseudouridine synthase, at 4,542,662 to 4,543,372
_19675
CA264_19680: CA264_19680 - two-component sensor histidine kinase, at 4,543,558 to 4,544,598
_19680
Position (kb)
4542
4543
4544 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4541.682 kb on + strand at 4541.683 kb on - strand at 4541.688 kb on + strand, within CA264_19670 at 4541.689 kb on - strand, within CA264_19670 at 4541.766 kb on + strand, within CA264_19670 at 4541.767 kb on - strand, within CA264_19670 at 4541.767 kb on - strand, within CA264_19670 at 4541.767 kb on - strand, within CA264_19670 at 4541.808 kb on + strand, within CA264_19670 at 4541.809 kb on - strand, within CA264_19670 at 4541.815 kb on + strand, within CA264_19670 at 4541.836 kb on + strand, within CA264_19670 at 4541.841 kb on + strand, within CA264_19670 at 4541.842 kb on - strand, within CA264_19670 at 4541.887 kb on - strand, within CA264_19670 at 4542.022 kb on - strand, within CA264_19670 at 4542.042 kb on + strand, within CA264_19670 at 4542.405 kb on + strand, within CA264_19670 at 4542.485 kb on + strand at 4542.820 kb on + strand, within CA264_19675 at 4542.821 kb on - strand, within CA264_19675 at 4542.847 kb on - strand, within CA264_19675 at 4542.865 kb on - strand, within CA264_19675 at 4542.865 kb on - strand, within CA264_19675 at 4542.872 kb on - strand, within CA264_19675 at 4542.879 kb on - strand, within CA264_19675 at 4542.887 kb on - strand, within CA264_19675 at 4542.985 kb on + strand, within CA264_19675 at 4542.985 kb on + strand, within CA264_19675 at 4542.985 kb on + strand, within CA264_19675 at 4543.107 kb on + strand, within CA264_19675 at 4543.248 kb on - strand, within CA264_19675 at 4543.292 kb on - strand, within CA264_19675 at 4543.323 kb on + strand at 4543.341 kb on - strand at 4543.365 kb on + strand at 4543.365 kb on + strand at 4543.380 kb on + strand at 4543.381 kb on - strand at 4543.387 kb on + strand at 4543.430 kb on + strand at 4543.532 kb on + strand at 4543.560 kb on - strand at 4543.560 kb on - strand at 4543.940 kb on - strand, within CA264_19680 at 4544.247 kb on + strand, within CA264_19680 at 4544.248 kb on - strand, within CA264_19680 at 4544.367 kb on + strand, within CA264_19680
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml remove 4,541,682 + -0.1 4,541,683 - +0.7 4,541,688 + CA264_19670 0.10 +0.9 4,541,689 - CA264_19670 0.10 +2.2 4,541,766 + CA264_19670 0.18 -0.3 4,541,767 - CA264_19670 0.18 -0.6 4,541,767 - CA264_19670 0.18 -1.0 4,541,767 - CA264_19670 0.18 -1.1 4,541,808 + CA264_19670 0.22 -0.1 4,541,809 - CA264_19670 0.23 -0.1 4,541,815 + CA264_19670 0.23 -0.4 4,541,836 + CA264_19670 0.25 +0.5 4,541,841 + CA264_19670 0.26 +0.3 4,541,842 - CA264_19670 0.26 -0.1 4,541,887 - CA264_19670 0.30 -0.2 4,542,022 - CA264_19670 0.44 +0.3 4,542,042 + CA264_19670 0.46 -0.5 4,542,405 + CA264_19670 0.83 +0.9 4,542,485 + +0.4 4,542,820 + CA264_19675 0.22 +0.7 4,542,821 - CA264_19675 0.22 +1.9 4,542,847 - CA264_19675 0.26 +1.6 4,542,865 - CA264_19675 0.29 +0.7 4,542,865 - CA264_19675 0.29 -0.1 4,542,872 - CA264_19675 0.30 +0.1 4,542,879 - CA264_19675 0.31 +0.1 4,542,887 - CA264_19675 0.32 +0.6 4,542,985 + CA264_19675 0.45 -1.7 4,542,985 + CA264_19675 0.45 +0.4 4,542,985 + CA264_19675 0.45 +0.4 4,543,107 + CA264_19675 0.63 +0.3 4,543,248 - CA264_19675 0.82 +0.7 4,543,292 - CA264_19675 0.89 +1.7 4,543,323 + +0.2 4,543,341 - -0.8 4,543,365 + +0.4 4,543,365 + -0.1 4,543,380 + +0.7 4,543,381 - +0.0 4,543,387 + -2.1 4,543,430 + +0.2 4,543,532 + -0.6 4,543,560 - +0.0 4,543,560 - -0.9 4,543,940 - CA264_19680 0.37 +0.6 4,544,247 + CA264_19680 0.66 +1.9 4,544,248 - CA264_19680 0.66 -2.6 4,544,367 + CA264_19680 0.78 -2.1
Or see this region's nucleotide sequence