Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19495

Experiment: m.b. Carbenicillin 0.0015 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_19490 and CA264_19495 are separated by 22 nucleotidesCA264_19495 and CA264_19500 are separated by 88 nucleotidesCA264_19500 and CA264_19505 are separated by 252 nucleotides CA264_19490: CA264_19490 - carbamoyl phosphate synthase small subunit, at 4,502,933 to 4,504,048 _19490 CA264_19495: CA264_19495 - phosphopyruvate hydratase, at 4,504,071 to 4,505,348 _19495 CA264_19500: CA264_19500 - septum formation initiator, at 4,505,437 to 4,505,733 _19500 CA264_19505: CA264_19505 - Fe-S protein assembly chaperone HscA, at 4,505,986 to 4,507,851 _19505 Position (kb) 4504 4505 4506Strain fitness (log2 ratio) -1 0 1 2at 4503.087 kb on - strand, within CA264_19490at 4503.381 kb on + strand, within CA264_19490at 4503.426 kb on + strand, within CA264_19490at 4503.426 kb on + strand, within CA264_19490at 4503.451 kb on - strand, within CA264_19490at 4503.523 kb on + strand, within CA264_19490at 4503.557 kb on + strand, within CA264_19490at 4503.670 kb on - strand, within CA264_19490at 4503.688 kb on + strand, within CA264_19490at 4503.689 kb on - strand, within CA264_19490at 4503.689 kb on - strand, within CA264_19490at 4503.746 kb on + strand, within CA264_19490at 4503.747 kb on - strand, within CA264_19490at 4503.904 kb on + strand, within CA264_19490at 4503.905 kb on - strand, within CA264_19490at 4503.956 kb on + strandat 4504.034 kb on - strandat 4504.044 kb on + strandat 4504.044 kb on + strandat 4504.045 kb on - strandat 4504.046 kb on + strandat 4504.051 kb on - strandat 4504.056 kb on + strandat 4505.326 kb on - strandat 4505.391 kb on + strandat 4505.407 kb on - strandat 4505.436 kb on + strandat 4505.436 kb on + strandat 4505.437 kb on - strandat 4505.748 kb on - strandat 4505.748 kb on - strandat 4505.759 kb on + strandat 4505.857 kb on - strandat 4505.857 kb on - strandat 4505.857 kb on - strandat 4505.872 kb on + strandat 4505.875 kb on - strandat 4505.938 kb on + strandat 4505.938 kb on + strandat 4505.977 kb on - strandat 4505.982 kb on + strandat 4505.982 kb on + strandat 4505.982 kb on + strandat 4505.982 kb on + strandat 4505.983 kb on - strandat 4505.983 kb on - strandat 4505.983 kb on - strandat 4506.042 kb on - strandat 4506.045 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
remove
4,503,087 - CA264_19490 0.14 +1.0
4,503,381 + CA264_19490 0.40 -0.0
4,503,426 + CA264_19490 0.44 +0.3
4,503,426 + CA264_19490 0.44 -0.2
4,503,451 - CA264_19490 0.46 +0.2
4,503,523 + CA264_19490 0.53 -0.1
4,503,557 + CA264_19490 0.56 -0.4
4,503,670 - CA264_19490 0.66 +0.1
4,503,688 + CA264_19490 0.68 -0.3
4,503,689 - CA264_19490 0.68 +0.3
4,503,689 - CA264_19490 0.68 +0.9
4,503,746 + CA264_19490 0.73 -0.4
4,503,747 - CA264_19490 0.73 -1.3
4,503,904 + CA264_19490 0.87 +2.6
4,503,905 - CA264_19490 0.87 -0.7
4,503,956 + +0.8
4,504,034 - +1.2
4,504,044 + +2.5
4,504,044 + +0.5
4,504,045 - +1.3
4,504,046 + -0.1
4,504,051 - +0.9
4,504,056 + +0.5
4,505,326 - -0.7
4,505,391 + -1.7
4,505,407 - -0.2
4,505,436 + -0.8
4,505,436 + +0.5
4,505,437 - +0.3
4,505,748 - +0.1
4,505,748 - +0.3
4,505,759 + -1.6
4,505,857 - +0.9
4,505,857 - +0.8
4,505,857 - +1.3
4,505,872 + +0.0
4,505,875 - +0.5
4,505,938 + +0.0
4,505,938 + -0.5
4,505,977 - -0.0
4,505,982 + +0.0
4,505,982 + -1.1
4,505,982 + +0.3
4,505,982 + +0.1
4,505,983 - +1.6
4,505,983 - -0.7
4,505,983 - +0.8
4,506,042 - +1.2
4,506,045 - +0.6

Or see this region's nucleotide sequence