Experiment: m.b. Carbenicillin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19120 and CA264_19125 are separated by 315 nucleotides CA264_19125 and CA264_19130 are separated by 72 nucleotides CA264_19130 and CA264_19135 are separated by 51 nucleotides CA264_19135 and CA264_19140 are separated by 47 nucleotides CA264_19140 and CA264_19145 are separated by 73 nucleotides
CA264_19120: CA264_19120 - B12-binding domain-containing radical SAM protein, at 4,444,075 to 4,446,276
_19120
CA264_19125: CA264_19125 - hypothetical protein, at 4,446,592 to 4,446,891
_19125
CA264_19130: CA264_19130 - DUF2798 domain-containing protein, at 4,446,964 to 4,447,191
_19130
CA264_19135: CA264_19135 - hypothetical protein, at 4,447,243 to 4,447,527
_19135
CA264_19140: CA264_19140 - hypothetical protein, at 4,447,575 to 4,447,883
_19140
CA264_19145: CA264_19145 - hypothetical protein, at 4,447,957 to 4,449,057
_19145
Position (kb)
4446
4447
4448 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4446.260 kb on - strand at 4446.262 kb on - strand at 4446.262 kb on - strand at 4446.262 kb on - strand at 4446.262 kb on - strand at 4446.280 kb on - strand at 4446.284 kb on - strand at 4446.292 kb on - strand at 4446.348 kb on - strand at 4446.421 kb on - strand at 4446.421 kb on - strand at 4446.423 kb on - strand at 4446.435 kb on - strand at 4446.439 kb on - strand at 4446.439 kb on - strand at 4446.533 kb on + strand at 4446.534 kb on - strand at 4446.574 kb on - strand at 4446.628 kb on + strand, within CA264_19125 at 4446.662 kb on - strand, within CA264_19125 at 4446.886 kb on - strand at 4446.886 kb on - strand at 4446.893 kb on - strand at 4446.893 kb on - strand at 4446.893 kb on - strand at 4446.893 kb on - strand at 4446.920 kb on + strand at 4446.965 kb on + strand at 4446.992 kb on + strand, within CA264_19130 at 4446.992 kb on + strand, within CA264_19130 at 4446.993 kb on - strand, within CA264_19130 at 4446.993 kb on - strand, within CA264_19130 at 4447.098 kb on + strand, within CA264_19130 at 4447.098 kb on + strand, within CA264_19130 at 4447.100 kb on + strand, within CA264_19130 at 4447.441 kb on + strand, within CA264_19135 at 4447.451 kb on + strand, within CA264_19135 at 4447.453 kb on - strand, within CA264_19135 at 4447.505 kb on + strand at 4447.505 kb on + strand at 4447.510 kb on - strand at 4447.575 kb on - strand at 4447.595 kb on + strand at 4447.596 kb on - strand at 4447.597 kb on + strand at 4447.597 kb on + strand at 4447.598 kb on - strand at 4447.598 kb on - strand at 4447.601 kb on + strand at 4447.601 kb on + strand at 4447.601 kb on + strand at 4447.607 kb on - strand, within CA264_19140 at 4447.607 kb on - strand, within CA264_19140 at 4447.715 kb on - strand, within CA264_19140 at 4447.737 kb on - strand, within CA264_19140 at 4447.770 kb on + strand, within CA264_19140 at 4447.771 kb on - strand, within CA264_19140 at 4447.771 kb on - strand, within CA264_19140 at 4447.774 kb on - strand, within CA264_19140 at 4447.837 kb on - strand, within CA264_19140 at 4447.837 kb on - strand, within CA264_19140 at 4447.882 kb on - strand at 4447.882 kb on - strand at 4447.901 kb on - strand at 4447.958 kb on + strand at 4447.996 kb on - strand at 4448.033 kb on + strand at 4448.033 kb on + strand at 4448.034 kb on - strand at 4448.034 kb on - strand at 4448.034 kb on - strand at 4448.075 kb on + strand, within CA264_19145 at 4448.075 kb on + strand, within CA264_19145 at 4448.076 kb on - strand, within CA264_19145 at 4448.076 kb on - strand, within CA264_19145 at 4448.076 kb on - strand, within CA264_19145 at 4448.079 kb on + strand, within CA264_19145 at 4448.079 kb on + strand, within CA264_19145 at 4448.079 kb on + strand, within CA264_19145 at 4448.079 kb on + strand, within CA264_19145 at 4448.079 kb on + strand, within CA264_19145 at 4448.079 kb on + strand, within CA264_19145 at 4448.079 kb on + strand, within CA264_19145 at 4448.080 kb on - strand, within CA264_19145 at 4448.080 kb on - strand, within CA264_19145 at 4448.080 kb on - strand, within CA264_19145 at 4448.080 kb on - strand, within CA264_19145 at 4448.081 kb on + strand, within CA264_19145 at 4448.112 kb on - strand, within CA264_19145 at 4448.171 kb on + strand, within CA264_19145 at 4448.186 kb on + strand, within CA264_19145 at 4448.190 kb on + strand, within CA264_19145
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml remove 4,446,260 - -0.1 4,446,262 - -0.7 4,446,262 - -1.3 4,446,262 - -1.6 4,446,262 - -0.6 4,446,280 - -0.0 4,446,284 - +0.3 4,446,292 - -0.1 4,446,348 - -1.1 4,446,421 - +0.2 4,446,421 - -2.3 4,446,423 - +0.8 4,446,435 - +0.7 4,446,439 - -0.1 4,446,439 - +0.0 4,446,533 + +0.5 4,446,534 - +0.3 4,446,574 - -0.2 4,446,628 + CA264_19125 0.12 +0.4 4,446,662 - CA264_19125 0.23 +0.2 4,446,886 - +0.3 4,446,886 - -0.3 4,446,893 - +0.3 4,446,893 - +1.2 4,446,893 - -0.3 4,446,893 - +0.5 4,446,920 + +2.5 4,446,965 + +0.1 4,446,992 + CA264_19130 0.12 -1.9 4,446,992 + CA264_19130 0.12 -0.3 4,446,993 - CA264_19130 0.13 -1.5 4,446,993 - CA264_19130 0.13 -0.3 4,447,098 + CA264_19130 0.59 +1.1 4,447,098 + CA264_19130 0.59 +0.5 4,447,100 + CA264_19130 0.60 -0.3 4,447,441 + CA264_19135 0.69 +1.2 4,447,451 + CA264_19135 0.73 +0.1 4,447,453 - CA264_19135 0.74 +0.2 4,447,505 + +4.1 4,447,505 + +0.2 4,447,510 - -0.7 4,447,575 - +0.2 4,447,595 + -2.4 4,447,596 - +0.2 4,447,597 + +0.5 4,447,597 + -0.1 4,447,598 - -0.7 4,447,598 - -0.3 4,447,601 + +0.5 4,447,601 + +1.0 4,447,601 + -1.0 4,447,607 - CA264_19140 0.10 +0.2 4,447,607 - CA264_19140 0.10 -0.2 4,447,715 - CA264_19140 0.45 +0.1 4,447,737 - CA264_19140 0.52 +1.3 4,447,770 + CA264_19140 0.63 +0.6 4,447,771 - CA264_19140 0.63 -0.1 4,447,771 - CA264_19140 0.63 +0.5 4,447,774 - CA264_19140 0.64 +0.3 4,447,837 - CA264_19140 0.85 -0.4 4,447,837 - CA264_19140 0.85 +0.1 4,447,882 - -0.0 4,447,882 - +0.2 4,447,901 - -0.1 4,447,958 + +0.7 4,447,996 - +1.5 4,448,033 + +0.2 4,448,033 + +0.6 4,448,034 - -0.5 4,448,034 - +0.2 4,448,034 - +0.5 4,448,075 + CA264_19145 0.11 +0.5 4,448,075 + CA264_19145 0.11 -2.7 4,448,076 - CA264_19145 0.11 +0.7 4,448,076 - CA264_19145 0.11 +0.2 4,448,076 - CA264_19145 0.11 +0.5 4,448,079 + CA264_19145 0.11 +0.4 4,448,079 + CA264_19145 0.11 -0.1 4,448,079 + CA264_19145 0.11 +0.0 4,448,079 + CA264_19145 0.11 +0.2 4,448,079 + CA264_19145 0.11 +0.3 4,448,079 + CA264_19145 0.11 +1.7 4,448,079 + CA264_19145 0.11 +0.2 4,448,080 - CA264_19145 0.11 -0.1 4,448,080 - CA264_19145 0.11 +0.7 4,448,080 - CA264_19145 0.11 +1.3 4,448,080 - CA264_19145 0.11 +1.1 4,448,081 + CA264_19145 0.11 +1.9 4,448,112 - CA264_19145 0.14 +0.6 4,448,171 + CA264_19145 0.19 -0.5 4,448,186 + CA264_19145 0.21 +0.8 4,448,190 + CA264_19145 0.21 +0.0
Or see this region's nucleotide sequence