Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19020

Experiment: m.b. Carbenicillin 0.0015 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_19015 and CA264_19020 are separated by 589 nucleotidesCA264_19020 and CA264_19025 are separated by 260 nucleotides CA264_19015: CA264_19015 - IS256 family transposase, at 4,420,548 to 4,421,759 _19015 CA264_19020: CA264_19020 - PA-phosphatase, at 4,422,349 to 4,423,152 _19020 CA264_19025: CA264_19025 - methionine adenosyltransferase, at 4,423,413 to 4,424,717 _19025 Position (kb) 4422 4423 4424Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4421.514 kb on - strand, within CA264_19015at 4421.518 kb on - strand, within CA264_19015at 4421.544 kb on + strand, within CA264_19015at 4421.545 kb on - strand, within CA264_19015at 4421.545 kb on - strand, within CA264_19015at 4421.547 kb on - strand, within CA264_19015at 4421.643 kb on + strandat 4421.643 kb on + strandat 4421.856 kb on + strandat 4421.919 kb on + strandat 4421.920 kb on - strandat 4421.930 kb on + strandat 4422.099 kb on + strandat 4422.174 kb on + strandat 4422.188 kb on - strandat 4422.194 kb on + strandat 4422.195 kb on - strandat 4422.195 kb on - strandat 4422.209 kb on + strandat 4422.210 kb on - strandat 4422.265 kb on + strandat 4422.266 kb on - strandat 4422.288 kb on - strandat 4422.298 kb on - strandat 4422.307 kb on - strandat 4422.327 kb on - strandat 4422.327 kb on - strandat 4422.334 kb on - strandat 4422.343 kb on - strandat 4422.343 kb on - strandat 4422.343 kb on - strandat 4422.343 kb on - strandat 4422.348 kb on - strandat 4422.350 kb on + strandat 4422.351 kb on - strandat 4422.351 kb on - strandat 4422.351 kb on - strandat 4422.359 kb on + strandat 4422.378 kb on + strandat 4422.401 kb on - strandat 4422.401 kb on - strandat 4422.401 kb on - strandat 4422.402 kb on + strandat 4422.402 kb on + strandat 4422.403 kb on - strandat 4422.403 kb on - strandat 4422.482 kb on - strand, within CA264_19020at 4422.532 kb on + strand, within CA264_19020at 4422.570 kb on - strand, within CA264_19020at 4422.660 kb on - strand, within CA264_19020at 4422.716 kb on + strand, within CA264_19020at 4422.794 kb on + strand, within CA264_19020at 4422.795 kb on - strand, within CA264_19020at 4422.795 kb on - strand, within CA264_19020at 4422.872 kb on + strand, within CA264_19020at 4422.873 kb on - strand, within CA264_19020at 4422.914 kb on + strand, within CA264_19020at 4422.914 kb on + strand, within CA264_19020at 4422.914 kb on + strand, within CA264_19020at 4422.915 kb on - strand, within CA264_19020at 4422.915 kb on - strand, within CA264_19020at 4422.944 kb on - strand, within CA264_19020at 4423.139 kb on - strandat 4423.139 kb on - strandat 4423.141 kb on + strandat 4423.153 kb on - strandat 4423.172 kb on - strandat 4423.172 kb on - strandat 4423.174 kb on + strandat 4423.174 kb on + strandat 4423.218 kb on + strandat 4423.254 kb on - strandat 4423.272 kb on + strandat 4423.320 kb on - strandat 4423.320 kb on - strandat 4423.349 kb on - strandat 4423.386 kb on + strandat 4423.387 kb on - strandat 4423.394 kb on - strandat 4423.397 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
remove
4,421,514 - CA264_19015 0.80 -0.4
4,421,518 - CA264_19015 0.80 -0.1
4,421,544 + CA264_19015 0.82 +0.4
4,421,545 - CA264_19015 0.82 -1.9
4,421,545 - CA264_19015 0.82 +0.5
4,421,547 - CA264_19015 0.82 +0.9
4,421,643 + -0.2
4,421,643 + -0.4
4,421,856 + -0.4
4,421,919 + +0.8
4,421,920 - -0.6
4,421,930 + -0.4
4,422,099 + -0.6
4,422,174 + -1.8
4,422,188 - -1.7
4,422,194 + +0.6
4,422,195 - +0.8
4,422,195 - -0.1
4,422,209 + -0.3
4,422,210 - -0.4
4,422,265 + -2.4
4,422,266 - -0.2
4,422,288 - +0.4
4,422,298 - -1.3
4,422,307 - +0.8
4,422,327 - -1.4
4,422,327 - -2.3
4,422,334 - -0.1
4,422,343 - -0.9
4,422,343 - -0.7
4,422,343 - -0.7
4,422,343 - +0.1
4,422,348 - +0.2
4,422,350 + -1.1
4,422,351 - +0.8
4,422,351 - -0.1
4,422,351 - -0.6
4,422,359 + +1.4
4,422,378 + -0.5
4,422,401 - +0.6
4,422,401 - +1.6
4,422,401 - +0.2
4,422,402 + -0.2
4,422,402 + -0.2
4,422,403 - -0.2
4,422,403 - -0.2
4,422,482 - CA264_19020 0.17 +0.9
4,422,532 + CA264_19020 0.23 -0.7
4,422,570 - CA264_19020 0.27 +0.2
4,422,660 - CA264_19020 0.39 +0.0
4,422,716 + CA264_19020 0.46 -0.9
4,422,794 + CA264_19020 0.55 -0.8
4,422,795 - CA264_19020 0.55 -0.7
4,422,795 - CA264_19020 0.55 +0.9
4,422,872 + CA264_19020 0.65 -0.7
4,422,873 - CA264_19020 0.65 +1.6
4,422,914 + CA264_19020 0.70 +0.1
4,422,914 + CA264_19020 0.70 +2.9
4,422,914 + CA264_19020 0.70 +0.7
4,422,915 - CA264_19020 0.70 +1.5
4,422,915 - CA264_19020 0.70 +0.4
4,422,944 - CA264_19020 0.74 +0.0
4,423,139 - -2.1
4,423,139 - -0.1
4,423,141 + -0.2
4,423,153 - -0.5
4,423,172 - -0.7
4,423,172 - +0.5
4,423,174 + -0.7
4,423,174 + +0.1
4,423,218 + -0.4
4,423,254 - -1.5
4,423,272 + -0.1
4,423,320 - +0.2
4,423,320 - +4.1
4,423,349 - -1.1
4,423,386 + -0.1
4,423,387 - +0.1
4,423,394 - +0.8
4,423,397 + -0.1

Or see this region's nucleotide sequence